Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G06300 426 / 2e-151 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1) AT3G28480 362 / 4e-126 Oxoglutarate/iron-dependent oxygenase (.1.2) AT3G28490 337 / 8e-117 Oxoglutarate/iron-dependent oxygenase (.1) AT1G20270 253 / 2e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G17720 246 / 7e-81 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 245 / 1e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 237 / 3e-77 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT4G25600 209 / 2e-66 Oxoglutarate/iron-dependent oxygenase (.1) AT2G43080 187 / 8e-58 AT-P4H-1 P4H isoform 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012014 [exp] 608 / 0 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032183 [exp] 356 / 9e-124 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10014502 [exp] 328 / 5e-113 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10028404 [exp] 248 / 2e-81 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 248 / 2e-81 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10005620 [exp] 224 / 7e-72 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017249 [exp] 209 / 2e-65 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031048 [exp] 191 / 6e-60 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10038855 [exp] 182 / 6e-55 AT4G25600 250 / 2e-81 Oxoglutarate/iron-dependent oxygenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G197700 [exp] 516 / 0 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G075100 [exp] 363 / 2e-126 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075300 [exp] 309 / 7e-106 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.005G108000 [exp] 253 / 2e-83 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G060800 [exp] 240 / 4e-78 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G245300 [exp] 237 / 2e-77 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G142800 [exp] 229 / 1e-73 AT4G25600 278 / 4e-93 Oxoglutarate/iron-dependent oxygenase (.1) Potri.010G027201 [exp] 207 / 2e-66 AT5G18900 204 / 3e-65 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G232100 [exp] 183 / 2e-56 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.001G296800 [exp] 173 / 2e-52 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0213 [flax] [poplar] ShK-like PF01549 [flax] [poplar] ShK ShK domain-like CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10016271 pacid=23142685 polypeptide=Lus10016271 locus=Lus10016271.g ID=Lus10016271.BGIv1.0 annot-version=v1.0 ATGGCTGCTGGTTGGATACCTCTCTTCTTCTTCTGGATCTCATTTCTACTACACAAATCCGTCGCCTACCCTGCTACTTCCAGCTCCGCCATTGATCCCT CCAAAGTCAAACAGGTCTCCTGGAAGCCAAGAGCATTTGTGTATCAGGGGTTTCTTACCGACTTGGAATGCGATCACCTCATCTCCCTGGCGAAATCGGA GCTGAAGAGATCAGCTGTTGCTGATAATGTCAGCGGGCAGAGTCAGCTGAGCGAAGTTCGAACCAGCTCTGGAATGTTCATTCGCAAGGGAAAGGATCCG ATTGTTGATGGTATAGAAGAGAAAATTGCAGCGTGGACCTTTCTTCCTAAAGAAAATGGGGAGGACATTCAGGTGTTGAGGTACGAGCACGGGCAGAAGT ACGATCCGCATTACGATTACTTCACCGACAAGGTCAACATCGCACGTGGTGGACACCGCGTCGCGACTGTGCTCATGTACCTTACCGATGTCCAAAAGGG CGGCGAAACCGTGTTCCCTTCCGCAGAGGAACCTCCACGTCGTCGCAGAGTTGCGACTAAAGAAGAAGACCTCTCCGAATGCGCCAAGAAAGGGGTTGCA GTGAGGCCAAGGAGAGGAGACGCGCTGCTGTTCTTCAGCCTGTATCCAACTGCGGTACCTGACACGAGCAGCCTCCACGCAGGATGTCCAGTGATCGAGG GCGAGAAATGGTCAGCGACGAAGTGGATCCACGTGAACTCGTTCGAGAAACACGTAGAGGTAGGTGGGAACTGTACCGACAACAACGACAGTTGCGAGAG GTGGGCAGCTCTAGGGGAGTGCACTAAGAATCCGGAGTATATGGTTGGATCTGCTGTGCTTCCTGGTTATTGCAGGAGGAGTTGCAAGGCTTGTTAG
AA sequence Show only first row Show all	>Lus10016271 pacid=23142685 polypeptide=Lus10016271 locus=Lus10016271.g ID=Lus10016271.BGIv1.0 annot-version=v1.0 MAAGWIPLFFFWISFLLHKSVAYPATSSSAIDPSKVKQVSWKPRAFVYQGFLTDLECDHLISLAKSELKRSAVADNVSGQSQLSEVRTSSGMFIRKGKDP IVDGIEEKIAAWTFLPKENGEDIQVLRYEHGQKYDPHYDYFTDKVNIARGGHRVATVLMYLTDVQKGGETVFPSAEEPPRRRRVATKEEDLSECAKKGVA VRPRRGDALLFFSLYPTAVPDTSSLHAGCPVIEGEKWSATKWIHVNSFEKHVEVGGNCTDNNDSCERWAALGECTKNPEYMVGSAVLPGYCRRSCKAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	0	1
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	1.7	0.8580
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10010999 [exp]	2.0	0.8936
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	3.7	0.8726
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	5.3	0.8512
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	6.1	0.8030
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10012014 [exp]	8.4	0.8253
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	9.8	0.8287
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	10.1	0.8214
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Lus10012034 [exp]	12.5	0.8442
AT1G71190		TTN4, SAG18	senescence associated gene 18 ...		Lus10001354 [exp]	12.7	0.8155

Compare expression of checked genes

Lus10016271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.