Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12130 230 / 2e-75 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT5G06770 229 / 5e-75 C3HZnF KH domain-containing protein / zinc finger (CCCH type) family protein (.1) AT3G19360 53 / 1e-07 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT1G32360 45 / 3e-05 C3HZnF Zinc finger (CCCH-type) family protein (.1) AT2G35430 41 / 0.0006 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004183 [exp] 347 / 3e-119 AT5G06770 261 / 8e-86 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10021043 [exp] 341 / 4e-118 AT5G06770 262 / 1e-87 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012017 [exp] 182 / 7e-58 AT3G12130 186 / 8e-60 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012015 [exp] 134 / 6e-40 AT3G12130 66 / 1e-14 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10012016 [exp] 107 / 1e-29 AT3G12130 73 / 2e-17 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Lus10043287 [exp] 57 / 5e-09 AT3G19360 290 / 7e-96 Zinc finger (CCCH-type) family protein (.1) Lus10019431 [exp] 57 / 5e-09 AT3G19360 266 / 2e-87 Zinc finger (CCCH-type) family protein (.1) Lus10000486 [exp] 48 / 4e-06 AT1G32360 337 / 6e-115 Zinc finger (CCCH-type) family protein (.1) Lus10004573 [exp] 47 / 5e-06 AT1G32360 342 / 1e-116 Zinc finger (CCCH-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046600 [exp] 329 / 1e-113 AT5G06770 265 / 2e-89 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.006G191900 [exp] 314 / 1e-107 AT3G12130 256 / 2e-85 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.003G213200 [exp] 296 / 3e-100 AT5G06770 162 / 1e-48 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.001G013200 [exp] 287 / 4e-97 AT5G06770 169 / 2e-51 KH domain-containing protein / zinc finger (CCCH type) family protein (.1) Potri.004G169500 [exp] 63 / 3e-11 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 58 / 2e-09 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.003G061600 [exp] 57 / 2e-09 AT3G19360 109 / 1e-27 Zinc finger (CCCH-type) family protein (.1) Potri.003G093600 [exp] 48 / 3e-06 AT1G32360 353 / 2e-120 Zinc finger (CCCH-type) family protein (.1) Potri.001G140800 [exp] 45 / 3e-05 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.004G095100 [exp] 43 / 0.0001 AT1G66810 215 / 7e-68 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10016272 pacid=23142691 polypeptide=Lus10016272 locus=Lus10016272.g ID=Lus10016272.BGIv1.0 annot-version=v1.0 ATGGACCCTACGAGGAAGAGAGGGAGACCCGGCGCCGTAGTAAGCAGCTCCAATGGCGGATTCAAGAAATCCAGACAAGAAATGGACTCGTTAGCAATTG GTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGTAAGTCCGGCTGTCCATTCGGTGAGGGCTGCCACTTCTTGCATCACGTACCCGGTGGCTA CAATGCCGTTGCCCAAATCATGAATAGGCCTTCAAAGCCGAAGAATGTACCTCCATCGCAACCACCTTCCAACGGTTCTTCTACTCCACAAGCTATCAAA ACCAGAATGTGCAAAACATACAACACGGCCGAAGGATGCAAATTCGGCGACAAATGCCATTTCGCCCATGGAGAGTGGGAGCTCGGACTGCCAACCGTTC TATCCCATAACAAACATTGTATGAGCCACACGGAGCCACCCCTGCCGGCTCCTACTGCTGGTTTTGGCGATACTGCAACTGTAAAAATCAGCATCGCCGC AACCCTCGCAGGGACCATAATCGGGAACTCGATGCAGATATGTAGGCAGACGGGAACGAAGCTATCGATCGGGGAGCATGAAGTGGATCCCATTAACTTG AGGAACATCGAGCTGGAAGGAACGTTCGAACAGATCGGTCAAGCTAGCTCGATGTTGACGGAGCTAATTGCAAACATTGGTGGTCCAGCCACCGGAGGAG GAAGGAAATCGTCAGGGGAGAAGCATCATCCGGGAAGCAACTACAAGACGAAGATATGCGACAATTTTGTTAAAGGGTCTTGCACCTTTGGCGAAAGATG CCAGTTTGCTCATGGTGCTGGTGAAATGCGGAAGACTGGTGTATGA
AA sequence Show only first row Show all	>Lus10016272 pacid=23142691 polypeptide=Lus10016272 locus=Lus10016272.g ID=Lus10016272.BGIv1.0 annot-version=v1.0 MDPTRKRGRPGAVVSSSNGGFKKSRQEMDSLAIGVGSKSKPCTKFFSKSGCPFGEGCHFLHHVPGGYNAVAQIMNRPSKPKNVPPSQPPSNGSSTPQAIK TRMCKTYNTAEGCKFGDKCHFAHGEWELGLPTVLSHNKHCMSHTEPPLPAPTAGFGDTATVKISIAATLAGTIIGNSMQICRQTGTKLSIGEHEVDPINL RNIELEGTFEQIGQASSMLTELIANIGGPATGGGRKSSGEKHHPGSNYKTKICDNFVKGSCTFGERCQFAHGAGEMRKTGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10016272 [exp]	0	1
					Lus10007667 [exp]	65.1	0.7658
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10000639 [exp]	66.3	0.7440
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	71.0	0.7610
AT2G04940			scramblase-related (.1)		Lus10010075 [exp]	75.9	0.7314
AT1G10890			unknown protein		Lus10043141 [exp]	101.3	0.7455
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	117.2	0.7376
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	134.9	0.7293
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016644 [exp]	143.7	0.7236
AT4G20330			Transcription initiation facto...		Lus10005100 [exp]	144.1	0.6992
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10031458 [exp]	149.2	0.7214

Compare expression of checked genes

Lus10016272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.