Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05990 511 / 0 ENR1, MOD1 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55310 54 / 7e-08 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 50 / 8e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 49 / 3e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G46170 46 / 2e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G12800 45 / 4e-05 SDRB, DECR short-chain dehydrogenase-reductase B (.1) AT2G07640 44 / 4e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 45 / 6e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 44 / 9e-05 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29330 44 / 0.0001 TRI tropinone reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012019 [exp] 695 / 0 AT2G05990 534 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10021040 [exp] 598 / 0 AT2G05990 559 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004186 [exp] 592 / 0 AT2G05990 554 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004984 [exp] 65 / 1e-11 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10018323 [exp] 61 / 3e-10 AT3G12800 395 / 4e-139 short-chain dehydrogenase-reductase B (.1) Lus10017129 [exp] 59 / 2e-09 AT3G12800 391 / 7e-138 short-chain dehydrogenase-reductase B (.1) Lus10006699 [exp] 54 / 5e-08 AT3G46170 404 / 2e-143 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004985 [exp] 54 / 1e-07 AT2G29340 322 / 5e-110 NAD-dependent epimerase/dehydratase family protein (.1.2.3) Lus10040271 [exp] 47 / 1e-05 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G046701 [exp] 571 / 0 AT2G05990 526 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G013500 [exp] 543 / 0 AT2G05990 553 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T014016 [exp] 539 / 0 AT2G05990 549 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G212700 [exp] 536 / 0 AT2G05990 546 / 0.0 MOSAIC DEATH 1, ENOYL-ACP REDUCTASE 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G125900 [exp] 57 / 5e-09 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.001G244900 [exp] 47 / 2e-05 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 45 / 3e-05 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 43 / 0.0002 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 41 / 0.0008 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.001G245000 [exp] 41 / 0.001 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016274 pacid=23142641 polypeptide=Lus10016274 locus=Lus10016274.g ID=Lus10016274.BGIv1.0 annot-version=v1.0 ATGGCAACTCTCACCACTGCAGGTGTGGCAACAGGCAGAAGAATCATCAGTTTTCGGCGTAAAGTATTTCATTCGATGGTGACAGCAAGCTTGAGTACAC AGATGGCATCCATTACTAGCCTTCCAACCTCCTCGAGCAAGCAATTGTTTCATAAGCCTATGATTGTAGTGCCTCAGAAATGTAGAAGAAGAATTGTCCC GGTTCGAGCAATGTCATCGACAAATGAGACCAGTCCCTTGCCAGGACTTCCCATCGATTTACGAGGCAAGAGAGCTTTTGTTGCTGGTGTAGCAGACGAC AATGGATACGGTTGGGCAATAGCAAAATCACTTGCTGCAGCTGGTGCGGAAATTCTTCTTGGTACATGGGTGCCTGCTTTGAACATATTCGAAAGCAGCC TACGACGTGGGAAGTTTGACAAATCGCGCGTCTTACCCGATGGTTCTCTAATGGAAATCACTAAAGTGTATCCTATGGATGCAGTCTTCGATTGCCCTGA GGATGTTCCTGAAGATATTAAAACAAACAAGCGCTATGCAGGATCGTCGAATTGGACCGTCGAGGAGCTCGCTGAATCAGTAAAGCAGGATTTCGGTAGC ATTGACATCCTTGTCCACTCGCTTGCTAACGGGCCAGAGGTCGTCAAGCCACTTCTCGAAACGTCGAGGAACGGTTACCTTGCAGCCATCTCCGCATCAA GTTACTCATTCATTTCCCTCCTGCAGAACTTCATTCCTATAATGAACCCAGGTGGTGCAACCGTTTCCTTGACATACATTGCTTCCGAAAGGATCATTCC CGGTTATGGTGGTGGGATGAGCTCAGCCAAGGCCGCTTTAGAGAGTGACACACGTGTGCTAGCCTTTGAGGCAGGAAGGAAGCACAAAATCAGAGTCAAC ACAATATCTGCAGGTCCGTTGAGAAGCCGAGCTGCGAAAGCAATCGGCTTTATCGACATGATGATTGATTACTCGTCGGCCAATGCACCCCTCCAGAAAG AGGTGACTGCAGAGGAAGTAGGGAATGCAGCAGCTTTCCTGGTTTCACCATTGGCATCAGCCATCACAGGGACAGTTCTTTACGTGGACAATGGTTTGAA TGCTATGGGAGTTGGAGTTGATAGTCCCCTTTTTGAGAGCCTTAACATCCCTAAAGCCAACTAG
AA sequence Show only first row Show all	>Lus10016274 pacid=23142641 polypeptide=Lus10016274 locus=Lus10016274.g ID=Lus10016274.BGIv1.0 annot-version=v1.0 MATLTTAGVATGRRIISFRRKVFHSMVTASLSTQMASITSLPTSSSKQLFHKPMIVVPQKCRRRIVPVRAMSSTNETSPLPGLPIDLRGKRAFVAGVADD NGYGWAIAKSLAAAGAEILLGTWVPALNIFESSLRRGKFDKSRVLPDGSLMEITKVYPMDAVFDCPEDVPEDIKTNKRYAGSSNWTVEELAESVKQDFGS IDILVHSLANGPEVVKPLLETSRNGYLAAISASSYSFISLLQNFIPIMNPGGATVSLTYIASERIIPGYGGGMSSAKAALESDTRVLAFEAGRKHKIRVN TISAGPLRSRAAKAIGFIDMMIDYSSANAPLQKEVTAEEVGNAAAFLVSPLASAITGTVLYVDNGLNAMGVGVDSPLFESLNIPKAN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	0	1
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	1.0	0.9698
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10009521 [exp]	2.0	0.9610
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10032542 [exp]	3.0	0.9424
AT1G63680		APG13, ATMURE, ...	PIGMENT DEFECTIVE EMBRYO 316, ...		Lus10002010 [exp]	3.0	0.9550
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Lus10005787 [exp]	3.7	0.9451
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	3.9	0.9502
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	4.2	0.9456
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	6.0	0.9518
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	6.3	0.9405
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	6.3	0.9446

Compare expression of checked genes

Lus10016274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.