Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06830 598 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012023 [exp] 955 / 0 AT5G06830 622 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059500 [exp] 675 / 0 AT5G06830 708 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05600 [flax] [poplar] DUF773 CDK5 regulatory subunit-associated protein 3
Representative CDS sequence Show only first row Show all	>Lus10016277 pacid=23142722 polypeptide=Lus10016277 locus=Lus10016277.g ID=Lus10016277.BGIv1.0 annot-version=v1.0 ATGCAGAAGCAGGACGACATCCAGAGCCTACCAATCGACATCACCTTCTCTCGTCTCGGAGAATGGCTGGTTGATCGGAAGAGAATACCGGCTAGTTGGA GGAAGAAGATTGCAGCCATCAGAGCTCGGATTTCGAAGGAGCTTTCCTCCTTGCCTAAGGACTTGGATCCGTATTTCCTGACTCTGGACCCTGAAGAGGT TGGTTACCTGGAGGTGAAAAAGATATACGAAATCCTCTCCAAGTCAACAAGTCCTGCTGATGCTTGGGAATCAATTGTACAATGTTTTGAAGAAGACTAT ATATTCCTTGGTGAGGCTGCACAAACAATAATCCAGAATGTATCTTATGAGATCCCGTATGAGAGAAAGCAAGTGCAGAAGATCCAGCAGCAGCTGGCCG AACTAGAGCGCAAGGAACCTGATGTGAAAAGGAGTGCAGCTTTATCAGCAGCAAATTATGTCAAGGCTTGTCAAGAACTTGGTTTGCAGGGGAACAACGT GAGGTTGGAACTTCTAGAGACTGCAAAGTCTCTCCCAAGCACATTTAGCAAGCTTTTGGAAGTTATAAATGGCGATAGTATGTCAAGAGCAATTGACTAT TATTCTGATTTTGTCAGAGATGTTCACACCGAGAAGGATAATTCTTCAGCAGCTGTCTTGTCAAGCTTGAGGGGCATCCGTGATAAATCTCCCTCGCTGA ATGTCTCTGCTGCACATGAGACCTCGGCTGGAAACCTTGAGTCAAATGCTGGCGGGGTGAAAGATTCGGCAGGGGAAATCGATCGGGATATCAGCACTGT AGAAGAGAAGTATGATGGGGGAAACGGTTTGGGGCCTTATGAATTAGTAAACGCCAACGAGATCTCGCAGGAACCTTCAAGACATCAAGATGCAGCGACT AAGGGGGAAGATCAACATCCGGACTTCTCTGTATCAGAAATCGATTGGGATGTTAGTGTCGAAACACCACAGATCGATGTCATAGATGATGATGGTCCCT CCAATTTGGGTACAGGGTATCCTATTTACATCGCTGATGATGACTCGGCTAACACTGCTGCCAGAAAGGAAGACAGGAGCCAGCTTCTAGAGACGGAGTA CCGTAACAAAATTCTTGATGATCTGTATGAGGTCAAATCGTTTTTGAGTCAACGGGTGGGAGAGTTGCGTAATGGAGAGACACTGTCGTTGCAACATCAA GTCCAGTCAGTTTCCCCCATGGTACTGCTGCAGTATGCTCCTGATGCCATCGAGAAGATGCTGTCTGACATTTCTTCGGCCATATCGTTGCTTACCGATA GGAAAACTCGAGACCTGATCATGATTCTCAACTCCAAAAGGTTTCTGGACAGACTAGTGAGTACCTTGGAAGAGAAGAAGCATCACGAGTCGAAGCTAAA AGAAGGTTTGAAAGACTTGGCTATCAAACGCATGGAGCTTCACAACTCTTTGTCCTCTTCGTGGCCGAAACAGGAAGCAGCCCTTACGAAAACAAGGGAG TTGAAGAAGCTCTGTGAGAGTACATTGTCCTCCATGTTCGACGGGAGACCTGTTCATATAATCGGAGAGATCAACTCTTTGCTGAGTAGCGGCATGGGGG CTTAG
AA sequence Show only first row Show all	>Lus10016277 pacid=23142722 polypeptide=Lus10016277 locus=Lus10016277.g ID=Lus10016277.BGIv1.0 annot-version=v1.0 MQKQDDIQSLPIDITFSRLGEWLVDRKRIPASWRKKIAAIRARISKELSSLPKDLDPYFLTLDPEEVGYLEVKKIYEILSKSTSPADAWESIVQCFEEDY IFLGEAAQTIIQNVSYEIPYERKQVQKIQQQLAELERKEPDVKRSAALSAANYVKACQELGLQGNNVRLELLETAKSLPSTFSKLLEVINGDSMSRAIDY YSDFVRDVHTEKDNSSAAVLSSLRGIRDKSPSLNVSAAHETSAGNLESNAGGVKDSAGEIDRDISTVEEKYDGGNGLGPYELVNANEISQEPSRHQDAAT KGEDQHPDFSVSEIDWDVSVETPQIDVIDDDGPSNLGTGYPIYIADDDSANTAARKEDRSQLLETEYRNKILDDLYEVKSFLSQRVGELRNGETLSLQHQ VQSVSPMVLLQYAPDAIEKMLSDISSAISLLTDRKTRDLIMILNSKRFLDRLVSTLEEKKHHESKLKEGLKDLAIKRMELHNSLSSSWPKQEAALTKTRE LKKLCESTLSSMFDGRPVHIIGEINSLLSSGMGA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06830			unknown protein		Lus10016277 [exp]	0	1
AT1G13750			Purple acid phosphatases super...		Lus10036902 [exp]	2.0	0.9243
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10009285 [exp]	3.2	0.9070
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	4.0	0.9210
AT1G30140			unknown protein		Lus10024751 [exp]	5.1	0.9280
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	5.9	0.9148
AT2G17787			unknown protein		Lus10013567 [exp]	6.5	0.9129
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	7.3	0.9231
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10020487 [exp]	7.5	0.9001
AT1G55200			Protein kinase protein with ad...		Lus10036100 [exp]	7.9	0.9088
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	8.9	0.9097

Compare expression of checked genes

Lus10016277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.