Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42210 216 / 1e-72 ATOEP16-3 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2.3.4) AT3G57900 44 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012024 [exp] 283 / 2e-99 AT2G42210 248 / 1e-85 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G059300 [exp] 223 / 6e-76 AT2G42210 218 / 1e-73 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10016278 pacid=23142740 polypeptide=Lus10016278 locus=Lus10016278.g ID=Lus10016278.BGIv1.0 annot-version=v1.0 ATGGATTCATCAGAGATGAGGTATTTGGAGGATGATATCACTCCAACCATGAAAACTTTGAAGGGTGCGACCATGGGATTAGTTACTGGAACTATTTGGG GTACCATTGTTGCCACTTGGCATGATGTGCCTCGTGTTGAGAAGCATGTCGCTCTCCCAGGGCTGATAAGGACCCTGAAGATGATGGGCAGTTACGGCTC AACATTTGCTGCTATTGGAGGTATTTACATTGGTGTTGAGCAGCTGCTGGAGCAGCAAAGAGCTAAGAGAGATTTCGTTAATGGAGCTGTTGGTGGTTTT GTCGCTGGGGCTTCTGTTCTAGGCTTGAGAGCAAGGAGCATCCCAACAGCTATTTCTGCAGGAGCAGCACTGGCTGTTACCTCGGCCCTCATTGATGCCG GAGGCCAGACCACAAGAGTAGACACCGGCAAGGAGTACTACCCTTACACCACCAAGAAGAGATCCACCGTCGATGCATAG
AA sequence Show only first row Show all	>Lus10016278 pacid=23142740 polypeptide=Lus10016278 locus=Lus10016278.g ID=Lus10016278.BGIv1.0 annot-version=v1.0 MDSSEMRYLEDDITPTMKTLKGATMGLVTGTIWGTIVATWHDVPRVEKHVALPGLIRTLKMMGSYGSTFAAIGGIYIGVEQLLEQQRAKRDFVNGAVGGF VAGASVLGLRARSIPTAISAGAALAVTSALIDAGGQTTRVDTGKEYYPYTTKKRSTVDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	0	1
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	1.0	0.9476
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10030358 [exp]	2.0	0.9175
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	3.5	0.9168
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10036786 [exp]	3.7	0.8910
AT5G58710		ROC7	rotamase CYP 7 (.1)		Lus10040666 [exp]	4.9	0.9132
AT3G22110		PAC1	20S proteasome alpha subunit C...		Lus10004236 [exp]	4.9	0.8958
AT4G21105			cytochrome-c oxidases;electron...		Lus10006276 [exp]	6.2	0.8619
AT3G20920			translocation protein-related ...		Lus10030136 [exp]	6.5	0.9035
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10018052 [exp]	6.8	0.8754
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	8.8	0.9047

Compare expression of checked genes

Lus10016278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.