Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 1429 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1394 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 1251 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 1105 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 1104 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 1073 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 1046 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 936 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 918 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 911 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012026 [exp] 1506 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1118 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 1102 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1101 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1099 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 1037 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 927 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 919 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 799 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G049100 [exp] 1443 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1417 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1303 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 1296 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1295 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 1163 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 1146 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 1137 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 1126 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 1124 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10016280 pacid=23142728 polypeptide=Lus10016280 locus=Lus10016280.g ID=Lus10016280.BGIv1.0 annot-version=v1.0 ATGCAGAGGCCTCCGCCAGGGGATTTCCTCCTGAAGGAGACGAACCCACATTTAGGAGGTGGGAAGATAACTGGTGATAAGCTCACCAGCACTTATGATC TTGTGGAGCAGATGCAGTATCTCTATGTCCGGGTTGTGAAAGCCAAGGACTTACCAGCAAAAGATGCCACTGGAAGCTGTGATCCTTACGTGGAAGTGAG ATTGGGGAACTACAAGGGCACGACTCGCCATTTTGAGAAGAAGACGAATCCCGAATGGAGCCAGGTGTTTGCGTTCTCGAAAGATCGTATCCAGGCCTCC GTGCTCGAAGTTACTGTGAAGGATAAGGACTTTTTGAAGGATGATTTCATCGGCCGTGTTATGTTCGATTTGAATGAGGTTCCGAAGAGGGTTCCTCCCG ATAGTCCGTTGGCGCCTCAGTGGTATAGATTGGAAGATAGGAAAAGTGACAAGGGGAAGGGTGAATTGATGCTTGCTGTTTGGATGGGGACTCAAGCCGA TGAAGCGTTCCCCGAGTCGTGGCATTCTGATGCTGCGACAGTGAGTGGCACCGATGCTCTTGCGAACATCCGCTCGAAAGTTTATCTTTCTCCCAAGCTG TGGTACTTGAGGGTGAATGTGATCGAAGCTCAGGACTTGATACCGAGTGATAAGGGGAGGTATCCGGAGGTGTTTGTTAAAGCTGTGTTGGGGAATCAAG CATTAAGGACTCGGATTTCCCCGAGTCGGACGATTAATCCAATGTGGAATGAAGATCTTATGTTTGTAGCTGCTGAGCCGTTCGAGGAGCCTTTGATTCT GAGTGTGGAAGATAGAGTTGCTCCGAACAAGGACGAAGTGCTGGGGAGGTGTGCGATTCCTTTACAGTATATGGATCGAAGGTATGATCACAAACCGGTG AATACTAGGTGGTTTAATCTTGAGAAGCATGTCGTTGTAGAAGGAGAAAAGAAGAAGGAACCTAAATTTTCGAGCAGGATTCATATGAGGGTCTGTTTGG AAGGTGGCTACCATGTTCTCGATGAGTCGACACACTATAGCAGCGACCTCCGTCCTACAGCCAAACAGCTCTGGAAATCGAGCATCGGAGTGCTCGAGCT CGGTGTTTTGAATGCTCAGGGATTGATGCCGATGAAAACTAAAGATGGCCGCGGGACAACAGATGCTTACTGCGTGGCTAAGTACGGTCAGAAGTGGGTT CGAACGAGGACAATCATCGACAGCTTTGCGCCGAAATGGAATGAGCAGTACACTTGGGAGGTGTTCGATCCGTGTACTGTTATCACCATTGGGGTATTCG ACAATTGCCATCTTCACGGAGGAGGAGACAAAGGCGGAGGTGCGAGGGATTCTCGAATCGGTAAGGTGAGAATCCGACTCTCGACTCTCGAAACTGACCG TGTCTACACTCACTCGTACCCTCTTCTCGTGTTGCATCCCAATGGTGTGAAGAAGATGGGAGAGATTCATTTGGCGATTCGGTTTACTTGCTCGTCGTTG CTGAACATGATGCATATGTACTCGCAACCGTTGCTGCCGAAAATGCATTACATTCACCCTTTGACCGTTAGCCAGCTGGACAGCTTAAGGCATCAGGCGA CTCAGATCGTGTCCATGAGGCTGAGCAGAGCAGAGCCGCCGTTGAGGAAGGAGATCGTTGAGTACATGCTCGATGTTGGTTCGCACATGTGGAGTATGAG GAGGAGCAAGGCTAACTTTTTCAGGATCATGGGAGTTCTTAGCGGGTTGATTGCTGTGGGGAAATGGTTTGATCAGATCTGCAACTGGAAGAATCCGATC ACTACAGTACTGATCCACATTCTGTTCATCATACTCGTTCTGTACCCGGAGCTGATCTTACCCACCATCTTTTTATACCTCTTCCTGATCGGCGTGTGGT ACTACCGATGGCGCCCGAGGCATCCTCCTCACATGGACACCAGACTCTCCCATGCTGAGTCAGCACATCCGGATGAACTCGATGAGGAGTTCGACACATT TCCGACATCCCGTCCTTCTGATATCGTCAGGATGAGGTACGATCGACTGAGAAGCATCGCCGGAAGGATTCAGACCGTGGTGGGAGACTTAGCTACACAG GGAGAGAGGCTTCAGTCTCTTCTTAGCTGGAGAGACCCGAGAGCCACCGCTCTCTTCGTGATATTCTGCTTGATTGCTGCCGTTGTTCTGTATGTGACTC CGTTCCAGGTTGTGGCGCTCCTCACAGGGCTTTACGTGCTTCGGCACCCCAGGTTCAGGCACAAGCTCCCATCGGTGCCTCTCAACTTCTTCCGGCGGCT TCCTGCAAGGACAGACTGCATGCTGTGA
AA sequence Show only first row Show all	>Lus10016280 pacid=23142728 polypeptide=Lus10016280 locus=Lus10016280.g ID=Lus10016280.BGIv1.0 annot-version=v1.0 MQRPPPGDFLLKETNPHLGGGKITGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDATGSCDPYVEVRLGNYKGTTRHFEKKTNPEWSQVFAFSKDRIQAS VLEVTVKDKDFLKDDFIGRVMFDLNEVPKRVPPDSPLAPQWYRLEDRKSDKGKGELMLAVWMGTQADEAFPESWHSDAATVSGTDALANIRSKVYLSPKL WYLRVNVIEAQDLIPSDKGRYPEVFVKAVLGNQALRTRISPSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDEVLGRCAIPLQYMDRRYDHKPV NTRWFNLEKHVVVEGEKKKEPKFSSRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGVLNAQGLMPMKTKDGRGTTDAYCVAKYGQKWV RTRTIIDSFAPKWNEQYTWEVFDPCTVITIGVFDNCHLHGGGDKGGGARDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAIRFTCSSL LNMMHMYSQPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPI TTVLIHILFIILVLYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHAESAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQ GERLQSLLSWRDPRATALFVIFCLIAAVVLYVTPFQVVALLTGLYVLRHPRFRHKLPSVPLNFFRRLPARTDCML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57880			Calcium-dependent lipid-bindin...		Lus10016280 [exp]	0	1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	3.5	0.9602
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028951 [exp]	4.2	0.9356
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	5.2	0.9505
AT4G23740			Leucine-rich repeat protein ki...		Lus10033936 [exp]	6.3	0.9187
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	7.2	0.9262
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	7.9	0.9505
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	9.2	0.9405
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10002620 [exp]	9.4	0.9439
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	11.2	0.9292
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	13.3	0.9116

Compare expression of checked genes

Lus10016280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.