Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62120 823 / 0 Class II aaRS and biotin synthetases superfamily protein (.1.2) AT5G52520 374 / 3e-124 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) AT5G10880 233 / 9e-73 tRNA synthetase-related / tRNA ligase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027506 [exp] 357 / 2e-117 AT5G52520 915 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Lus10039267 [exp] 355 / 5e-117 AT5G52520 929 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G187000 [exp] 870 / 0 AT3G62120 827 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.014G112400 [exp] 860 / 0 AT3G62120 812 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1.2) Potri.017G142500 [exp] 366 / 2e-121 AT5G52520 878 / 0.0 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Potri.004G078866 [exp] 127 / 1e-34 AT5G52520 215 / 3e-68 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1) Potri.004G078932 [exp] 77 / 1e-15 AT5G52520 204 / 1e-62 PROLYL-TRNA SYNTHETASE 1, OVULE ABORTION 6, Class II aaRS and biotin synthetases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0040 [flax] [poplar] PF09180 [flax] [poplar] ProRS-C_1 Prolyl-tRNA synthetase, C-terminal
Representative CDS sequence Show only first row Show all	>Lus10016281 pacid=23142751 polypeptide=Lus10016281 locus=Lus10016281.g ID=Lus10016281.BGIv1.0 annot-version=v1.0 ATGGACGCTGGGAAGAAGAAGGAAGTGAAGAAAGAGACTGGTTTAGGGCTCTCTTTCAAGAAGGATGAAAATTTTGGAGAGTGGTACTCAGAGGTGGTTG TCCATGGTGAGATGATTGAGTACTATGATATATCTGGCTGTTATATTCTGAGGCCATGGGCAATGAGTATATGGGAAACCATGCAAGTCTTCTTTGATGC AGAGATCAAGAAAATGAAAATCAAGAACTGCTATTTCCCTCTTTTTGTATCTTCTAGTGTCTTGGAAAAGGAGAAGGATCACATAGAAGGCTTTGCACCT GAGGTTGCATGGGTTACAAAATCTGGGAAATCCGACCTAGAAATTCCAATTGCAATCCGTCCTACGAGTGAAACCGTGATGTATCCCTACTTCTCCAAGT GGATAAGGGGACACCGTGATCTGCCGTTGAAACTCAATCAGTGGTGCAATGTTGTCCGTTGGGAGTTCAGCAATCCTACTCCATTTATCAGGAGCCGTGA GTTCCTCTGGCAAGAAGGGCATACTGCTTTTGCAACAAAAGCTGAAGCAGATGAAGAGGTCCTCCAAGTTCTGGAGCTATACAGACGCATTTACGAAGAA TTTTTAGCAATCCCTGTCGTAAAGGGCAAAAAAAGTGAGATGGAAAAGTTTGCTGGTGGACTTTACACAACCAGTGTTGAGGCATTTATTCCTAACACTG GTCGTGGTGTACAAGGTGCAACTTCACATTGTTTAGGTCAGAACTTTGCCAAAATGTTCGAGATAAACTTCGAAGATGATAAGGGGGAGAAGGGTATGGT CTGGCAGAACTCTTGGGCTTACAGTACTCGAACGATTGGAGTGATGATAATGGTCCACGGAGACGATAAAGGACTCGTCTTGCCACCTAAAGTAGCATCG GTTCAGGTCGTCGTGGTTCCCGTTCCCTACAAGGATGCTGACATGCAAGGAATCTACGACGCTTGTGCTGAAACAGTGGAGACCTTGTCCAAGGCAGGCA TTCGTGCAGAGTCCGACATAAGAGATAATTACTCTCCAGGCTGGAAGTACTCACAGTGGGAAATGAAGGGCGTCCCTCTCCGGATCGAAATAGGACCAAA GGATCTGGCTAATAATCAGGTCCGTGTTGTCCGTCGTGACACGGGAACAAAGGCAGATTTGAAGAGGGACGGTCTGGCCGAGCAAGTCAACAACTTGCTG GACAACATCCAGCAGAGCCTGTTTGATGCTGCCAAACAAAAGAGAGAGGCTTCGATTGTGGTTGCGAAGACCTGGGAAGAGTTCAAAGACGCCCTTGCCC AGAAGAAGATGATCTTAGCTCCTTGGTGTGACGAGGAGGAAGTGGAAAAGAAAGTTAAAGAGGATACTAAGGGCGAAATCGGAGCTGCAAAGACTCTGTG CTCTCCACTCGACCAGCCGGAACTCCCTGAAGGTACACTATGCTTTAAATCGGGGAAGCCGGCGAAGAAATGGACCTACTGGGGCAGGAGTTACTAG
AA sequence Show only first row Show all	>Lus10016281 pacid=23142751 polypeptide=Lus10016281 locus=Lus10016281.g ID=Lus10016281.BGIv1.0 annot-version=v1.0 MDAGKKKEVKKETGLGLSFKKDENFGEWYSEVVVHGEMIEYYDISGCYILRPWAMSIWETMQVFFDAEIKKMKIKNCYFPLFVSSSVLEKEKDHIEGFAP EVAWVTKSGKSDLEIPIAIRPTSETVMYPYFSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKAEADEEVLQVLELYRRIYEE FLAIPVVKGKKSEMEKFAGGLYTTSVEAFIPNTGRGVQGATSHCLGQNFAKMFEINFEDDKGEKGMVWQNSWAYSTRTIGVMIMVHGDDKGLVLPPKVAS VQVVVVPVPYKDADMQGIYDACAETVETLSKAGIRAESDIRDNYSPGWKYSQWEMKGVPLRIEIGPKDLANNQVRVVRRDTGTKADLKRDGLAEQVNNLL DNIQQSLFDAAKQKREASIVVAKTWEEFKDALAQKKMILAPWCDEEEVEKKVKEDTKGEIGAAKTLCSPLDQPELPEGTLCFKSGKPAKKWTYWGRSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62120			Class II aaRS and biotin synth...		Lus10016281 [exp]	0	1
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	1.4	0.9683
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10032620 [exp]	3.5	0.9491
AT2G40800			unknown protein		Lus10030504 [exp]	3.9	0.9558
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	4.7	0.9625
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	4.9	0.9559
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	4.9	0.9563
AT5G20600			unknown protein		Lus10027609 [exp]	5.3	0.9548
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10041519 [exp]	5.5	0.9553
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	7.9	0.9536
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10027401 [exp]	8.0	0.9545

Compare expression of checked genes

Lus10016281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.