Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03340 141 / 4e-35 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT4G26640 139 / 1e-34 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 138 / 4e-34 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT5G07100 130 / 4e-34 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G38470 134 / 9e-33 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G04880 130 / 7e-32 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT3G01080 128 / 2e-31 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT2G37260 120 / 3e-29 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) AT2G30250 113 / 2e-26 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT5G26170 107 / 2e-26 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012030 [exp] 2035 / 0 AT4G12020 141 / 6e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012027 [exp] 524 / 1e-168 AT4G12020 102 / 2e-24 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10012029 [exp] 376 / 5e-119 AT1G13960 108 / 4e-25 WRKY DNA-binding protein 4 (.1.2) Lus10029852 [exp] 214 / 2e-56 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10016595 [exp] 149 / 4e-37 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10007455 [exp] 147 / 5e-36 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10001265 [exp] 140 / 9e-35 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10003769 [exp] 141 / 2e-34 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10037131 [exp] 137 / 3e-34 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G091900 [exp] 150 / 3e-38 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1) Potri.004G120800 [exp] 146 / 2e-36 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.010G163000 [exp] 142 / 1e-35 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.011G087900 [exp] 141 / 8e-35 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 140 / 1e-34 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.016G128300 [exp] 137 / 2e-33 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.019G123500 [exp] 137 / 2e-33 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.013G153400 [exp] 137 / 3e-33 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.016G083600 [exp] 130 / 1e-31 AT2G37260 337 / 4e-112 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2) Potri.002G221600 [exp] 126 / 6e-31 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10016282 pacid=23142665 polypeptide=Lus10016282 locus=Lus10016282.g ID=Lus10016282.BGIv1.0 annot-version=v1.0 ATGGCTGATTCTGCAAGTCTGCTCAATGAAGATGATATTGAAGGTGTGGAACATTTTGGTTTCCCCTCTGCAAGGGTTGATTCTACAGGGCATGAGGTAC TGCAAGAAAAAGAAGATGATGATGGCAGCACCCTGGCAGGAAGTCGGAGGAAAACGGAGAAATCTGATGATTCTGCAGCAGGAAAGCCTGATGTTTCTTT CAGAACCAAGAGTGAGGTTGATGTACTTGATGACGGTGTCCTGTGGCGCAAGTACGACCAAAAACATGTGAAGAGAAGTCCTCACCCGAGGAGTTACTAC CAGTGCGCATATGCAGGATGTACAGTTGTAAAGTCTCTACAGAGGGATTCAGATGATCCTGCATTTGTTATTACTACTTATAAAGGTGAACATAACCATG ATGTTGTAACACCTAGTGCAAAGATACTTGATCATCATGGCACTACAGGGCCACAGACTACTGGTGACTCATTCAGTACTGGATCGAATTATAGTGGCAT TACTGGCCTTGATAACAGTGGTGTGCGAAACCTTTTGAGTGACTCGTCGAGGATTGTTTCAACTACAAGTGGAAGTGCAATAGAAGAGGAAGAGCACGGT AATAATGTTCTGTTCCCTTCATTGTACAGGGAGAAGGATATTACTTCCCGAACCAAGGTTAAGGATAATGATGGCTATCATTGGCGCAAGTATCACCAGA AAGTTATCAAGGGAAATGCTTATCCCAGGAGCTACTATAGGTGCACATATGTAGGTTGCTCAGCTAAAAAGCATGTGGAGAGGGACTTAGATAATCCGGA CTACGTTATTACGTCTTATAAAGGAGTACACAACCATGATTTTGCAACACCTAGAGCCAAGTGTATCGGTCATGTCCCTTTAGAGCCACTGACAATTGGT GACTCTTCTTGTGAGAAAAAAACAAAGACAATTGGTGACACTCTCTGTAGCGGGTCAGACAATAGTGGGTTAACTAGCCTTGATCTCAGAGGTGCGGAAA ACCGGAGGAGTGACTCTTTGAGGATTGGCTCATCAAAAGGTGACAGTATAGTTGAAGAGGAAGGACATGGTAATAATGATAAATTCCGCAAATGTAGAAG GGAGAAGAACAAAGTTATTACTCTCCGAACCAAGAGTAAGGTTGATTTAGTAGATGATGGTTACCGTTGGCGCAAGTATGGCCAAAAGGCGGTGTCAGGA AGTGCTTATTGGAGGGGCTACTACAAGTGCACACATACTGCATGTCCTGCTAGAAAGACTGTGTATAGGGATTCAGATGATCCGGAATTTGTAATAACAA AAGTTCAAAATGACCACAGCCATGCTGCTGTAAATGCTCTTGACGCTGTAGTGCGACCAGCTTTTTCATCGGGTGCGGAGTATGAAACAAGTAGCTTCAT GAGCCTCAATCTTGGAATCGGTAAGACAACCGCTGCTGAAACTAGACACGAGGGAAATGTCAACGTGATGAAAACTGATGAGGTTAAATTCGGGGTGGAG TTTTCTGCTTATGATGGTTATAGCTCTTTTGATAATCCTTTTACTGAAAGTGGGTACTGGAACAATGATGAGAAGTTATCATCTATGCTATGGAGCCCAT TTGAGACTGGATTTGACTACATTGGCACGGCATTGAGCCCATTTGATTTCGGAATTAAGACGAGTGTTGCTGATAAGCCTATGCCTCAACCACCTTCGAG TTATTTACTAAGGAGTGGATCAGAGGAAAGTGGCGCCATTATCCTCGACCTAGGAGTTGGGCTGAGTTCTTCTGCTGAAACTACATGTAATGGCAAGCAA GAAGCAGAAAAGGTTGAAGGTAGAAGTACGCTGGCCATGGCTGAATCAAAGTGGTTGCAGTTCCAAGAGAGTTATATTTATATGGAAGAAGTATACCTTT CGAGGTCTCCCTCGCCGTCGTACTTGTGTGCACACAACTTGATTTCAATCTTCTTGCCACGTTGTAACGTTGAACATCTATGGAATGGAGGAGAGCAGAT TCCGGACCTGTCTAAAGCTCAGAAACTCGAGAGCTTGATGCTCGAGGGCTGCTTAAACTTGGTCAGCGTCTCTTCTGTTCAGCATCTCACCAACCTTCAA AATCTCAACCTCAAGCGCTGTCGAAGTCTTAAGGGGCTTCCCAGTCTGGTCAAGTTGAAGCTCCTCAAAACTCTCAATCTATCTCACTGCTCTAATCTCA GGAGACTTCCTCCATCACTTGGTTGCCTTTCCAGCCTTTGTGAACTCAATCTTAGAAACTGTGTAAAACTTGACTATCTCCCACAAGGTGTCGTGAAGTT GATGAGATCTCTTGAAACTCTAAATGTTTCCGGCTGCTCAAGTCTTTGGAAATCGATCGGTGCAGATGACGATGCAGCATTGCCTTTACCCCTGGAGAAT CTACCTAGTACCAGTAGCATTTCCATGAGCCACTCTTTTGAAGATGTTAATCTCGACCCACAACCAATCGAAAATGTGCAAGTTGAGGCTGAAGGCAAAT GTGCAAGTATCGAAGATTCACCACCGCAAGAACTTCCATTGGATTTGAGCGATATATGGAGAAAGAACCCTTTGGAATCGGATGATGTTGCTGCTTTTAT GACCACTCAGTTGATTGATTTGCTACCTTCGGGATCCAGGATTAGGGAGTGGTTGCTACCTAATATGGATTCTTCTTCCAATGCTTGCTCTTCTCCTCCA GAAGACACCGCTTTCCATGCCCGAAACAGTATACAAAATGAGGGATCAGACGATGGGAAGAGTATGATGGAGGCTGTTCGAGAGAAGGAAGATGAACTTG TTGGCAATGTTAAACATGAAGATGATCCAGAGAGTGTAGGAAAGAGTTTGCAGATCATTGGGGCGGAATTTGTTTGCCATCAAGTGGAAGATTATGATGT TAATCCGAGCAGCGAGAAGGATGGTTCATCTTTGGTGGGGAAGGTTATGCAGCGATTTTGTCAGCAATGTTCAAAGTACCATGTCCTTGGAGAATTCGGC GAAAAGGAAAGCACCTGTGTCAGGAATAAGAGGCCGAATGACTGTTCAATCGACACGGCTGAATCCGATGAGAAACGCATGTTGGTGCTAAAGAGAACAA GAATGAGTTATGACGACACTGTCAAGACTGATCTTGCTTTGCATTCGCTTGAATTGTTGGAAGAGTATCTAACCATGTCTTTGGAAGATCTCGAAAATGC AAATGCACTCAGCAACATCGAGAGTGCTCTCCGAGCCATGATCGAACACTACTCTTCTTCAAGCTCGAATCTCTACGATAAGGCAACAGTGGAAAGCATG TTGGCTGAGTTGAAACAGAGTGTCGTCGAGACTGTGTTTAGCATGCAGAAGGCAAAGTCTGAGTCTGCCGTTGTTGCAGGGAAAATGACGGAGCTTGATA CTGACTTGGGTCATGGACAGTTGCACCTTAGCTTGCTTGACGCTGAAATGTCGTTAATCTTGGAGGAGGAAGAGAACATTGAGGCTGAGATTCAGCGCCT GATGGAAAAGAAGGGAAAGTTAGTGCTGGCCTAA
AA sequence Show only first row Show all	>Lus10016282 pacid=23142665 polypeptide=Lus10016282 locus=Lus10016282.g ID=Lus10016282.BGIv1.0 annot-version=v1.0 MADSASLLNEDDIEGVEHFGFPSARVDSTGHEVLQEKEDDDGSTLAGSRRKTEKSDDSAAGKPDVSFRTKSEVDVLDDGVLWRKYDQKHVKRSPHPRSYY QCAYAGCTVVKSLQRDSDDPAFVITTYKGEHNHDVVTPSAKILDHHGTTGPQTTGDSFSTGSNYSGITGLDNSGVRNLLSDSSRIVSTTSGSAIEEEEHG NNVLFPSLYREKDITSRTKVKDNDGYHWRKYHQKVIKGNAYPRSYYRCTYVGCSAKKHVERDLDNPDYVITSYKGVHNHDFATPRAKCIGHVPLEPLTIG DSSCEKKTKTIGDTLCSGSDNSGLTSLDLRGAENRRSDSLRIGSSKGDSIVEEEGHGNNDKFRKCRREKNKVITLRTKSKVDLVDDGYRWRKYGQKAVSG SAYWRGYYKCTHTACPARKTVYRDSDDPEFVITKVQNDHSHAAVNALDAVVRPAFSSGAEYETSSFMSLNLGIGKTTAAETRHEGNVNVMKTDEVKFGVE FSAYDGYSSFDNPFTESGYWNNDEKLSSMLWSPFETGFDYIGTALSPFDFGIKTSVADKPMPQPPSSYLLRSGSEESGAIILDLGVGLSSSAETTCNGKQ EAEKVEGRSTLAMAESKWLQFQESYIYMEEVYLSRSPSPSYLCAHNLISIFLPRCNVEHLWNGGEQIPDLSKAQKLESLMLEGCLNLVSVSSVQHLTNLQ NLNLKRCRSLKGLPSLVKLKLLKTLNLSHCSNLRRLPPSLGCLSSLCELNLRNCVKLDYLPQGVVKLMRSLETLNVSGCSSLWKSIGADDDAALPLPLEN LPSTSSISMSHSFEDVNLDPQPIENVQVEAEGKCASIEDSPPQELPLDLSDIWRKNPLESDDVAAFMTTQLIDLLPSGSRIREWLLPNMDSSSNACSSPP EDTAFHARNSIQNEGSDDGKSMMEAVREKEDELVGNVKHEDDPESVGKSLQIIGAEFVCHQVEDYDVNPSSEKDGSSLVGKVMQRFCQQCSKYHVLGEFG EKESTCVRNKRPNDCSIDTAESDEKRMLVLKRTRMSYDDTVKTDLALHSLELLEEYLTMSLEDLENANALSNIESALRAMIEHYSSSSSNLYDKATVESM LAELKQSVVETVFSMQKAKSESAVVAGKMTELDTDLGHGQLHLSLLDAEMSLILEEEENIEAEIQRLMEKKGKLVLA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10016282 [exp]	0	1
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	1.0	0.8963
AT1G03670			ankyrin repeat family protein ...		Lus10020209 [exp]	2.4	0.8616
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	3.7	0.8345
					Lus10033298 [exp]	5.1	0.8672
AT5G59880		ADF3	actin depolymerizing factor 3 ...		Lus10025318 [exp]	5.3	0.8176
AT5G17460			unknown protein		Lus10009117 [exp]	7.7	0.8381
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10033594 [exp]	13.7	0.8075
					Lus10043073 [exp]	14.5	0.8116
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	15.6	0.8507
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	16.2	0.8216

Compare expression of checked genes

Lus10016282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.