Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65520 129 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012031 [exp] 357 / 7e-127 AT5G65520 145 / 9e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035948 [exp] 117 / 2e-32 AT5G65520 201 / 1e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025714 [exp] 113 / 4e-31 AT5G65520 209 / 6e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111300 [exp] 188 / 3e-60 AT5G65520 159 / 4e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016283 pacid=23142696 polypeptide=Lus10016283 locus=Lus10016283.g ID=Lus10016283.BGIv1.0 annot-version=v1.0 ATGGATCGAATGGTGAGCGACATACTTCTCCAAGCGCTTCTGATCTTCGCCTCAGTCTTTATGTTCCTCTACACTCACGGCGTCCCTCAGAATCTTTTCG CCAGGCTCCGCCACCGCGCCCGCGCCGCCGAAACCGAGGCCAAGCGCCGCTTCGTCCGAGGCGCGCAGCTACTCGCGGAGGCAAGGCGGAGCTCCTCCAA CAAGTCCCGATCTGCTCTAGCCAAACAGGCTGAGGAGGAGGCTGACAAGGCGATCGCCTATGATCCGAGTGACGCTGCTGCTCACATCCTCAAAGGTCTT GCGCTAGATCTCCAGGGATTCAAGACCTCCGCTCTGGATTCGTTCGATGTGGCTCTGTCGCCGCTGGCTATCAAGTCGTTGACCGAAATGGAGAAGGGAG ACGCGATGTACCGGAGGGCGGAGCTTCTGATGTCGATTAAGAACCGGGAAGGGAGAGTGGAGTCGGCGATCCAGGATCTGACTCAGGCGGTGGAGATCTG TGAAGAGAAGGCTAAGGCGTTTAGGCTTCTAGGGGAGTGTTACGAGGCGAAGGAGATGAAGGATAAGGCGAGGAGCGCTTATGAAGGAGCTCTGAAGGTG GATCCGGAGTACTCGGCTGCTCAAGTAGCACTTGATCGATTGACGGAGAAGTAG
AA sequence Show only first row Show all	>Lus10016283 pacid=23142696 polypeptide=Lus10016283 locus=Lus10016283.g ID=Lus10016283.BGIv1.0 annot-version=v1.0 MDRMVSDILLQALLIFASVFMFLYTHGVPQNLFARLRHRARAAETEAKRRFVRGAQLLAEARRSSSNKSRSALAKQAEEEADKAIAYDPSDAAAHILKGL ALDLQGFKTSALDSFDVALSPLAIKSLTEMEKGDAMYRRAELLMSIKNREGRVESAIQDLTQAVEICEEKAKAFRLLGECYEAKEMKDKARSAYEGALKV DPEYSAAQVALDRLTEK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	0	1
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10012031 [exp]	1.0	0.9285
AT5G42440			Protein kinase superfamily pro...		Lus10015344 [exp]	1.4	0.8718
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Lus10006493 [exp]	3.9	0.8523
AT1G75260			oxidoreductases, acting on NAD...		Lus10012616 [exp]	6.9	0.7194
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	10.4	0.8030
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	11.2	0.7805
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10034278 [exp]	14.5	0.7483
AT2G19130			S-locus lectin protein kinase ...		Lus10004283 [exp]	15.1	0.7291
AT2G22910		NAGS1	N-acetyl-l-glutamate synthase ...		Lus10012093 [exp]	16.1	0.7674
AT4G32020			unknown protein		Lus10001936 [exp]	17.0	0.7906

Compare expression of checked genes

Lus10016283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.