Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 375 / 1e-133 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 345 / 7e-122 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G65270 311 / 2e-108 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 310 / 5e-108 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT5G60860 266 / 7e-91 AtRABA1f RAB GTPase homolog A1F (.1) AT1G09630 265 / 1e-90 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) AT4G18430 264 / 4e-90 AtRABA1e RAB GTPase homolog A1E (.1) AT2G33870 264 / 6e-90 ArRABA1h RAB GTPase homolog A1H (.1) AT1G07410 263 / 1e-89 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G28550 262 / 2e-89 AtRABA1i RAB GTPase homolog A1I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012032 [exp] 416 / 5e-150 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 361 / 9e-126 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 363 / 2e-124 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10035924 [exp] 320 / 7e-112 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 318 / 2e-111 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1) Lus10014732 [exp] 318 / 3e-111 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10000637 [exp] 316 / 2e-110 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 316 / 2e-110 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10002725 [exp] 315 / 5e-110 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050400 [exp] 367 / 7e-131 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 363 / 4e-129 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.001G270100 [exp] 349 / 2e-123 AT3G12160 379 / 2e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 324 / 1e-113 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 315 / 6e-110 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.006G000300 [exp] 268 / 1e-91 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 265 / 1e-90 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.010G197200 [exp] 264 / 3e-90 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.014G102200 [exp] 262 / 4e-89 AT1G01200 332 / 2e-116 ARABIDOPSIS RAB GTPASE HOMOLOG A3, RAB GTPase homolog A3 (.1) Potri.019G092500 [exp] 261 / 5e-89 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10016284 pacid=23142659 polypeptide=Lus10016284 locus=Lus10016284.g ID=Lus10016284.BGIv1.0 annot-version=v1.0 ATGTCGAATTATGTAGATTTAAATCAGAAGATAGATTACGTGTTCAAGGTGGTGCTGATCGGAGATTCGGCGGTGGGGAAGTCGCAACTGTTGGCGCGTT TCTCGAGGAACGAGTTTAGTGTCGATTCGAAGGCCACAATCGGGGTCGAGTTCCAGACGAAGACGCTTAGCATTGATAACAAGACCGTTAAAGCCCAGAT TTGGGACACCGCCGGCCAAGAAAGGTACAGAGCAGTAACGAGTGCGTACTACAGGGGAGCAGTGGGGGCAATGCTGGTCTACGACATGAGCAAGCGTCAG TCCTTCGACCACATGTCGCGGTGGCTCGACGAGCTCCGCAACCACGCCGACAAGAACATCGTCATCATGCTCATCGGCAACAAGTGCGACCTGGGAAGCC TGCGCGCTGTCCCTCAGGAGGATGCGCAGGAGTTCGCCCAGCGGGAGAACCTCTTCTTCATGGAGACCTCCGCATTGGACTCCACCAACGTCGAGACCAC GTTCTTGACCGTGTTGTCCGAGATCTACAGGATCGTCGGGAAGAAGACGCTGGCTGCCAACGACGACGAGCTGGACCCGGGCTCGAATCTGTTGAAAGGG ACGAGGATCATCGTCCCCGGCGGCGGTGAGAATGGGGACGGCCGGCGCGGCGGGTGTTGTGCATGA
AA sequence Show only first row Show all	>Lus10016284 pacid=23142659 polypeptide=Lus10016284 locus=Lus10016284.g ID=Lus10016284.BGIv1.0 annot-version=v1.0 MSNYVDLNQKIDYVFKVVLIGDSAVGKSQLLARFSRNEFSVDSKATIGVEFQTKTLSIDNKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDMSKRQ SFDHMSRWLDELRNHADKNIVIMLIGNKCDLGSLRAVPQEDAQEFAQRENLFFMETSALDSTNVETTFLTVLSEIYRIVGKKTLAANDDELDPGSNLLKG TRIIVPGGGENGDGRRGGCCA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10016284 [exp]	0	1
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	1.0	0.9974
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	2.0	0.9970
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10031607 [exp]	2.0	0.9904
AT5G60330			unknown protein		Lus10018274 [exp]	2.4	0.9962
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10010140 [exp]	5.9	0.9739
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	8.3	0.9835
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	8.8	0.9677
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022506 [exp]	9.2	0.9801
AT1G53903			Protein of unknown function (D...		Lus10003939 [exp]	9.3	0.9801
					Lus10032468 [exp]	9.9	0.9755

Compare expression of checked genes

Lus10016284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.