Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 140 / 2e-37 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT4G34400 78 / 2e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G60140 70 / 5e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 67 / 7e-12 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 59 / 7e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 59 / 7e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G66980 60 / 1e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 57 / 3e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 58 / 4e-09 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT5G60130 53 / 1e-07 B3 AP2/B3-like transcriptional factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032873 [exp] 793 / 0 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10023691 [exp] 166 / 8e-46 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 138 / 4e-36 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10016286 [exp] 130 / 3e-34 AT4G33280 166 / 7e-49 AP2/B3-like transcriptional factor family protein (.1) Lus10032749 [exp] 79 / 7e-18 AT4G33280 59 / 1e-11 AP2/B3-like transcriptional factor family protein (.1) Lus10032872 [exp] 90 / 9e-15 AT4G33280 93 / 2e-28 AP2/B3-like transcriptional factor family protein (.1) Lus10023844 [exp] 66 / 3e-12 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 65 / 3e-11 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 66 / 5e-11 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G129800 [exp] 173 / 6e-49 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 144 / 7e-39 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 142 / 6e-38 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 95 / 1e-20 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 70 / 7e-13 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 64 / 8e-11 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 64 / 8e-11 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G146900 [exp] 59 / 3e-09 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 56 / 1e-08 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.012G093200 [exp] 55 / 4e-08 AT3G18960 62 / 2e-11 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10016285 pacid=23145850 polypeptide=Lus10016285 locus=Lus10016285.g ID=Lus10016285.BGIv1.0 annot-version=v1.0 ATGCAGCTTCCTAATTTCATCCCGGGTAGAAAACTAATCAGTAAAAAACCAGCAATGGAATCTGGCAGTCGACCATCCAGCTGGGAAGAAGAAATCTACT GGAACAATTTCCAGTACACGCATTTCTCTACGTTTCTCCATTCTGATTTCAACTCCCGCCTTGTGATTCCGGCGAGGTTTGCAAAGAAGATGAGGACCAA GTTGCCCGCAACAGTCAATCTCAAGGGACCCAGTGGAAATAGCTGGAGTGTGGGTGTAGAGTCATCGAATGACGAAACTCTGTTCTTCAGCAGTGGTTGG AAGGAATTCGCCCAAGACCACTGTCTACACCCCACTGACCTTCTCATCTTCCGGTACAATGGAGACGCTCTGTTTGATGTATTGGTTTTCGATTTGGAGA GCTCCTGCGAGAAGGCGAGTTCGTATTTTGCACGGAAACAGGAGACGAGGAAGAAAATGAGGGGATATACTCCTGCAGCTACTACTTCTTCTGCCGGATT TATCTCTCCCTCGCCAGAACAACAACATCAGACTGGCGATACAACAAAACAGTCCACTTGCCAGCCTGTGATATCTGAATTACCAAACAAACGTGCTAGG ACCGGATGGACAAAGGCCACTGCAAGTCGTGATTGGAAGTCGGCGGCTGAGAAATCGAGACGGAGGGCTCTAAAATTAGCGAGTTATTTTACTGCTCGGA AACAGGGCACGGGGAACAAAATCAAACGGGTTAGGTCTGAAATGGAAGACCCGGTTAATCACAGTGGTTGGAAGCCGGCGGCAGAAGAATCGAATCAGAA AGTCTTAAAATCGGCAAGTTATTTTTGCGTGCAAAATCATCAGGAGATGGGGGGAAGTAGTACTGCTACCATATCTGGAGAGGATGGCAATAGCATACGT ACGAAAACCCCACCGTTGCCGACGTGCCCGCCGATAATCTGCGAACTGTCGAACAAAAGGGCTAGAGAAGAATTGACAAAGCCGGCGGGGGTTATGAATA ATGATTGGAAGACGGTGTCGGAGGAATCGAAACTAAAAGCTATAAGAGCAGCGAGATTTGCGTTAAAGGAAGACGGGTTCATCACGGTGATGAAAACCAC CCATGTTAAAACGTGTTTCTATATGACAATCCCTATGGCATGGCTGAAGAAGCACATGGATGGGCGGGAGAAGCAGGAAGTGATTCTAAGGGTAGGAGGG AGGGAATGGAGAGTGAGGTATAAGCTTCGTGAGAAAAGGGATTCAGGTGGACTTACCCATGGATGGAGGACATTCGCAGAGGATAACAATTTGAAACAGT TTGACGTTTGTTTGTTCCAACCAAGCAACAGCAGCTACAATGTTCCTGGTGCTGATGCAGCTGCTGACATCGTTCTGGACGTCGAGATCTTTCGCTGTTG A
AA sequence Show only first row Show all	>Lus10016285 pacid=23145850 polypeptide=Lus10016285 locus=Lus10016285.g ID=Lus10016285.BGIv1.0 annot-version=v1.0 MQLPNFIPGRKLISKKPAMESGSRPSSWEEEIYWNNFQYTHFSTFLHSDFNSRLVIPARFAKKMRTKLPATVNLKGPSGNSWSVGVESSNDETLFFSSGW KEFAQDHCLHPTDLLIFRYNGDALFDVLVFDLESSCEKASSYFARKQETRKKMRGYTPAATTSSAGFISPSPEQQHQTGDTTKQSTCQPVISELPNKRAR TGWTKATASRDWKSAAEKSRRRALKLASYFTARKQGTGNKIKRVRSEMEDPVNHSGWKPAAEESNQKVLKSASYFCVQNHQEMGGSSTATISGEDGNSIR TKTPPLPTCPPIICELSNKRAREELTKPAGVMNNDWKTVSEESKLKAIRAARFALKEDGFITVMKTTHVKTCFYMTIPMAWLKKHMDGREKQEVILRVGG REWRVRYKLREKRDSGGLTHGWRTFAEDNNLKQFDVCLFQPSNSSYNVPGADAAADIVLDVEIFRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10016285 [exp]	0	1
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	3.3	0.9475
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	4.7	0.9475
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	5.7	0.9475
					Lus10033096 [exp]	6.6	0.9475
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	7.4	0.9401
AT3G44150			unknown protein		Lus10021005 [exp]	8.1	0.9305
AT1G31450			Eukaryotic aspartyl protease f...		Lus10002630 [exp]	8.8	0.9292
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10006779 [exp]	9.4	0.9271
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	9.9	0.9259
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10004438 [exp]	10.5	0.9200

Compare expression of checked genes

Lus10016285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.