Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 162 / 2e-47 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 77 / 1e-15 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT4G34400 66 / 4e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G06220 57 / 1e-09 B3 REM21 AP2/B3-like transcriptional factor family protein (.1) AT3G06160 58 / 2e-09 B3 AP2/B3-like transcriptional factor family protein (.1.2) AT5G66980 57 / 4e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 53 / 2e-08 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G53310 52 / 2e-07 B3 REM20 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 51 / 2e-07 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G60140 51 / 4e-07 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023691 [exp] 461 / 1e-162 AT4G33280 192 / 4e-57 AP2/B3-like transcriptional factor family protein (.1) Lus10032872 [exp] 367 / 4e-128 AT4G33280 93 / 2e-28 AP2/B3-like transcriptional factor family protein (.1) Lus10032871 [exp] 159 / 8e-46 AT4G33280 152 / 1e-42 AP2/B3-like transcriptional factor family protein (.1) Lus10016285 [exp] 129 / 3e-34 AT4G33280 139 / 3e-37 AP2/B3-like transcriptional factor family protein (.1) Lus10032873 [exp] 129 / 6e-34 AT4G33280 129 / 1e-33 AP2/B3-like transcriptional factor family protein (.1) Lus10032749 [exp] 79 / 3e-18 AT4G33280 59 / 1e-11 AP2/B3-like transcriptional factor family protein (.1) Lus10010756 [exp] 69 / 5e-13 AT3G18990 99 / 2e-23 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10009688 [exp] 68 / 1e-12 AT3G18990 113 / 2e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 66 / 6e-12 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G036900 [exp] 193 / 3e-59 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129900 [exp] 183 / 3e-55 AT4G33280 237 / 9e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 104 / 3e-25 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 76 / 2e-15 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 64 / 2e-11 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 62 / 1e-10 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 60 / 5e-10 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.007G035500 [exp] 56 / 1e-08 AT5G66980 102 / 4e-25 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 54 / 4e-08 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 52 / 2e-07 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10016286 pacid=23145855 polypeptide=Lus10016286 locus=Lus10016286.g ID=Lus10016286.BGIv1.0 annot-version=v1.0 ATGCCCAAGAAATTTTCCAACAGGTTGAAAGGCAAATTACCAAAGACTGTGACTGTGACAGGTCCAAGCGGAGCGAATTGGAGCGTGGGATTGACAAACA CCGATGAAACCACCTTCTTCAGCCGCGGATGGAAAGAATTCGCCACCGACAATTGTCTACAGGTGGACGATCTTCTGGTGTTCAAGTACAACGGCGATTC CCACTTCGACGTCCTCATCCTCGAGTCACCAACCTCCTGCGAGAAGGCCACTGCTTACTTCGCCAAGAAGAAGAACAACGGAAGAGGAGGAGGCAAACAA TCCTCCGTAATTAGACGGGAGAGGGAAACAATCAACGAAATTTCCGGCGAAGGGGAATCCCCTGCCTCTCCAAGAATTCCGACGACGGAGAATGATGTCG ATTCGCCAGGGTCGTCGTCGACTGATTGGCAGCGTGTATCTTCCGGCGAGTGCAACAAAAGGCCGGCCAAGGTTAAATTGGACAAGGTGGGGAAATCGAG GAGGAGGAGGGTGGGTGAAGTGAATAGGACGCCGGTGACAGAGGAATCGAAAAGGAAGGCTTTGAGATTGGCCAGCGATGCAGGAAATCAAGACAGCTTC ATCTCCGTTATGAAAACTAGCAGCGTTTGTACTGCTTATTATCTGACTGTACCGAGCTGGTGGATGAAGAAACATGTGAAGAAGTACTGGGAGACGCAAG AGGTAATACTGAAGGTGGAAGAAAACGAATGGCCGGTAAAGTTCAGACTTAAGAAAGATTCGGGAGGGTTTGGTGGCGGATGGAGGATGTTCGTACAGGA CAACCAGTTGCAGATGTTTGATGTCTGTTTATTCCAACCCTGTTCTTCTTCTATGCCGCCTTACAATGATACCCTTGTTCTGGACGTTAAAATTTTCCGT TGTTAG
AA sequence Show only first row Show all	>Lus10016286 pacid=23145855 polypeptide=Lus10016286 locus=Lus10016286.g ID=Lus10016286.BGIv1.0 annot-version=v1.0 MPKKFSNRLKGKLPKTVTVTGPSGANWSVGLTNTDETTFFSRGWKEFATDNCLQVDDLLVFKYNGDSHFDVLILESPTSCEKATAYFAKKKNNGRGGGKQ SSVIRRERETINEISGEGESPASPRIPTTENDVDSPGSSSTDWQRVSSGECNKRPAKVKLDKVGKSRRRRVGEVNRTPVTEESKRKALRLASDAGNQDSF ISVMKTSSVCTAYYLTVPSWWMKKHVKKYWETQEVILKVEENEWPVKFRLKKDSGGFGGGWRMFVQDNQLQMFDVCLFQPCSSSMPPYNDTLVLDVKIFR C

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10016286 [exp]	0	1
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	4.6	0.6937
AT5G27260			unknown protein		Lus10035759 [exp]	20.4	0.6445
					Lus10008493 [exp]	21.0	0.6358
					Lus10030338 [exp]	26.5	0.5913
					Lus10041373 [exp]	30.7	0.6267
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	33.4	0.6087
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10022959 [exp]	44.7	0.5983
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	52.2	0.5682
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	53.3	0.6181
AT3G54940			Papain family cysteine proteas...		Lus10037951 [exp]	74.5	0.5413

Compare expression of checked genes

Lus10016286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.