Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26490 588 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT3G18950 472 / 7e-165 Transducin/WD40 repeat-like superfamily protein (.1) AT3G50390 471 / 2e-164 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34380 468 / 8e-163 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49450 461 / 3e-160 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 445 / 6e-156 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24130 265 / 2e-84 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50120 248 / 3e-78 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 247 / 1e-77 Transducin/WD40 repeat-like superfamily protein (.1) AT3G51930 239 / 1e-74 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032868 [exp] 791 / 0 AT2G26490 580 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011655 [exp] 746 / 0 AT2G26490 604 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022475 [exp] 499 / 4e-176 AT3G50390 536 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012036 [exp] 401 / 1e-136 AT3G18950 463 / 1e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10027944 [exp] 393 / 3e-134 AT3G18950 459 / 7e-160 Transducin/WD40 repeat-like superfamily protein (.1) Lus10016779 [exp] 396 / 6e-134 AT3G50390 435 / 2e-148 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021014 [exp] 386 / 3e-131 AT3G18950 423 / 3e-145 Transducin/WD40 repeat-like superfamily protein (.1) Lus10023836 [exp] 379 / 3e-127 AT3G18950 431 / 3e-147 Transducin/WD40 repeat-like superfamily protein (.1) Lus10034117 [exp] 260 / 1e-82 AT5G50120 391 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G130400 [exp] 630 / 0 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 627 / 0 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 531 / 0 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G148400 [exp] 511 / 2e-180 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G131100 [exp] 513 / 6e-180 AT3G50390 535 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G035100 [exp] 509 / 1e-179 AT3G50390 514 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G070900 [exp] 268 / 8e-86 AT5G50120 398 / 2e-137 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 261 / 3e-83 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G239600 [exp] 257 / 1e-80 AT3G50390 280 / 4e-89 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 249 / 2e-78 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10016289 pacid=23145858 polypeptide=Lus10016289 locus=Lus10016289.g ID=Lus10016289.BGIv1.0 annot-version=v1.0 ATGTTGAGCAACGATGAAGACTTCACCGCCTATCGGAACAGCAGTGCCTCTGCGTCCGCTGCAAGCCCCGGTATGTCGTTCGACCCAAACCGACTCAGCT GTGAAGGATCCCCCATGACTATGTCCCCTTGGAACCAAACGTCACCTTTCGAGAAAGCATCCTTCACGAGATACGACAATGCTTCTACCGCGGGGCAACA GAATGCCCTAATTGGGTCCTTGGTCCGGGAGGAAGGCCACATTTACTCGCTGGCAGCTTCCAAGGATTTGCTATACACCGGATCCGACAGCAAGAACATC CGGGTCTGGAAAAACCTCAAGGAATTTACGGCATTCAAATCAAGCAGTGGCTTAGTCAAAGCCATCATACTTTCTGGAGACAAAATCTTTACGGGTCATC AAGACGGTAAAATCCGGGTCTGGAAAGCTTCCCCTAAAACTCCAAGCGTTGTCAAAAGATCTGGAACGCTCCCCACTTTGAAAGACATTCTCAAAAGCTC CATCAAGCCTAGTAATTACGTTCAGGTTCGGCACCACAAAACGGCGCTGTGGATAAAGCACTCTGATGCCGTTTCGTGCCTCTGCTTCAATGAGGATCGA ACTCTTCTCTACTCTGCTTCTTGGGACCGCAGCTTCAAAGTCTGGAGGCTCTCCGATTCCAAATGCCTAGAATCGGTCAATGCACACGATGACGCAGTCA ACTCCGTCGTCACAACGGTGGAAGGATTGGTCTTCACCGGGTCCGCAGACGGAACAGTAAAGGTATGGAAAAGGGAGCAGAGTGGGAAAACGACCAAGCA TGCGCATCAGCAGACGCTTCTAAAGCAGGAATCTGCAGTCACTGCGTTGGCCGTGAATCCGTCAGGTTCACTAATTTACTGCGGATCCAGCGACGGAATC GTTAATTTCTGGGACAGGGAGCGGAATTTGAGCCACGGCGGAGATCTGAAGGGCCACAAATTGGCAGTGCTGTGTTTGGAGTCGGCAGGGAGTTTGGTTT TCAGTGGATCAGCGGACAAGACTATCTGCGTTTGGAGGAGGGATGGTAATATTCACACGTGTCTGTCGGTGCTGACGGGACATACCGGGCCGGTGAAGTG TTTGGCGGTCGAGGTGGACGGGGAAAATTCGAAGGCAGGAGATCCGAGGTGGATTGTGTACAGTGGGAGCTTGGATAAATCTGTCAAAGTTTGGAGCGTT TCGGAGATGGCGCCAGACGGGAATACAGGCGGAGGCGGTGGCGGAGCGGTGTTTTCCGATGGGGATTCATGGCCGTCTGAGGGTAGCAGCAGAGCAGGCA GGAAGGATTGGTGA
AA sequence Show only first row Show all	>Lus10016289 pacid=23145858 polypeptide=Lus10016289 locus=Lus10016289.g ID=Lus10016289.BGIv1.0 annot-version=v1.0 MLSNDEDFTAYRNSSASASAASPGMSFDPNRLSCEGSPMTMSPWNQTSPFEKASFTRYDNASTAGQQNALIGSLVREEGHIYSLAASKDLLYTGSDSKNI RVWKNLKEFTAFKSSSGLVKAIILSGDKIFTGHQDGKIRVWKASPKTPSVVKRSGTLPTLKDILKSSIKPSNYVQVRHHKTALWIKHSDAVSCLCFNEDR TLLYSASWDRSFKVWRLSDSKCLESVNAHDDAVNSVVTTVEGLVFTGSADGTVKVWKREQSGKTTKHAHQQTLLKQESAVTALAVNPSGSLIYCGSSDGI VNFWDRERNLSHGGDLKGHKLAVLCLESAGSLVFSGSADKTICVWRRDGNIHTCLSVLTGHTGPVKCLAVEVDGENSKAGDPRWIVYSGSLDKSVKVWSV SEMAPDGNTGGGGGGAVFSDGDSWPSEGSSRAGRKDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	1.0	1.0000
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	2.0	1.0000
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	2.4	1.0000
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	2.8	1.0000
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	3.5	0.9846
					Lus10014629 [exp]	3.7	0.9709
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	3.9	0.9956
					Lus10032804 [exp]	4.0	0.9674
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10023325 [exp]	4.2	0.9539
AT4G02210			unknown protein		Lus10032996 [exp]	4.7	0.9144

Compare expression of checked genes

Lus10016289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.