Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42660 526 / 0 Protein of unknown function (DUF616) (.1) AT2G02910 231 / 3e-70 Protein of unknown function (DUF616) (.1) AT1G34550 228 / 9e-67 EMB2756 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) AT4G09630 219 / 1e-63 Protein of unknown function (DUF616) (.1) AT4G38500 207 / 6e-61 Protein of unknown function (DUF616) (.1) AT1G28240 205 / 2e-59 Protein of unknown function (DUF616) (.1) AT1G53040 204 / 2e-59 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) AT5G46220 137 / 2e-35 Protein of unknown function (DUF616) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032863 [exp] 791 / 0 AT5G42660 594 / 0.0 Protein of unknown function (DUF616) (.1) Lus10032311 [exp] 617 / 0 AT5G42660 574 / 0.0 Protein of unknown function (DUF616) (.1) Lus10024684 [exp] 464 / 9e-147 AT5G42660 445 / 2e-139 Protein of unknown function (DUF616) (.1) Lus10036741 [exp] 232 / 1e-70 AT2G02910 545 / 0.0 Protein of unknown function (DUF616) (.1) Lus10037186 [exp] 231 / 1e-68 AT2G02910 546 / 0.0 Protein of unknown function (DUF616) (.1) Lus10028702 [exp] 218 / 2e-63 AT1G34550 750 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10009419 [exp] 218 / 2e-63 AT1G34550 753 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Lus10011175 [exp] 211 / 1e-61 AT1G28240 730 / 0.0 Protein of unknown function (DUF616) (.1) Lus10001446 [exp] 206 / 2e-59 AT1G28240 706 / 0.0 Protein of unknown function (DUF616) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G149900 [exp] 546 / 0 AT5G42660 633 / 0.0 Protein of unknown function (DUF616) (.1) Potri.010G094000 [exp] 240 / 8e-74 AT2G02910 565 / 0.0 Protein of unknown function (DUF616) (.1) Potri.019G084100 [exp] 222 / 6e-65 AT1G34550 707 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.013G113700 [exp] 213 / 1e-61 AT1G34550 708 / 0.0 EMBRYO DEFECTIVE 2756, Protein of unknown function (DUF616) (.1) Potri.001G399800 [exp] 206 / 3e-60 AT1G53040 574 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2) Potri.004G044100 [exp] 206 / 7e-60 AT1G28240 779 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G053000 [exp] 206 / 1e-59 AT1G28240 775 / 0.0 Protein of unknown function (DUF616) (.1) Potri.009G138000 [exp] 204 / 1e-59 AT4G38500 725 / 0.0 Protein of unknown function (DUF616) (.1) Potri.004G177600 [exp] 202 / 4e-59 AT4G38500 750 / 0.0 Protein of unknown function (DUF616) (.1) Potri.011G119300 [exp] 201 / 2e-58 AT1G53040 588 / 0.0 Protein of unknown function (DUF616) (.1), Protein of unknown function (DUF616) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04765 [flax] [poplar] DUF616 Protein of unknown function (DUF616)
Representative CDS sequence Show only first row Show all	>Lus10016294 pacid=23145866 polypeptide=Lus10016294 locus=Lus10016294.g ID=Lus10016294.BGIv1.0 annot-version=v1.0 ATGCCGTCTCCTTCAGTTTTCAGCAACAACAGCTTTTCGATTACCGTCGCCGACGATGATTCCGACGACCTCACTGGGAAGCGAGCCCGGGTCCGTAAGA AACGAAACAAGCCTATGAGCCACCGCGTAAATAACCATTTCCCCAGGCGCTTCGTTAGGTTTCTCTCCAGGTACTGGGTTTTACTCATCTTCATTCTCGC CCTCGTTCTACTCTTCTTCGAGATCTCCAAATTCGCCAAGGAACCAACCGTCCACAAAGTCGATCCCAAGAAACCGTCTCATCCCAATTTGAATCGGATG GATCGCGTTACCAGAATGGTCGGCGGTGTGAGGGAACCTTGCTTAAACCTCTTACCACTAGATGAACTTGAATTTCTGGATATTCCCAATGGCGGCGAGG TCGACAGTCCTGTTAACAACGTAATCTACTTGTCCGAGAAAGATGTGCCGGAGTCGGTACAGAACGCCACTCCCAAGTCGAAACAAATCAAATTCAATTC GTTCAGTGGATACCCGAGTCTTGAAGAGAGGGACAAAAGTTTTGTGGCGAACCAGACTGCGGCTGTACATTGTGGATTCTATAGTGAAGATGGAGGCTTT AAGATATCTGAAGCAGATAAGAGTTACATGGCAACGTGCAAAGTGGTGGTTTCTACATGTGCCTTTGGTGGTGGGGATAATCTTTACCAGCCCATTGGAA TGTCGAATGCATCACTTCAGAAGGTTTGCTATGTTGCATTTTGGGATGATATCACCCTTGCTGCACAGGATACGGCAGGGCACAAGATTGGGGAGGATAA TCTTATTGGGAAGTGGCGCATCGTCCTCGTGCAGGATCTTCCATTTGTTGATCAAAGATTAAATGGTAAAATCCCAAAGATGCTGGGGCATCGCCTGTTT CCTAATGCGAAGTACTCCATATGGGTAGACTCAAAGTCTCAGTTCAGGAGGGACCCTTTGGGTGTTCTGGAAGCTCTTCTCTGGCGTACAAATTCGGTGT TAGCAATCTCAGAGCACGGAGCTCGTAGCAGCTTGTATGATGAGGCCAAGGCCGTTGTGAAGAAAAACAAAGCCAATCCAGAAGAAGTTGAGGTACAATT GACCCAGTACAAAAATGATGGTATGCCGGAGGACAAGAGAATGAACGGAAAGAAAGCTCTGAATGAAGCTTCAATAATAGTGAGGGAGCACACGGCGGTA AGCAACCTGATGATGTGCCTGTGGTTCAACGAAGCTGTACGTTTCACATCAAGAGACCAACTAAGCTTCCCTTACGTACTATGGCGCCTGAAAGTTGTTG CAAAAATCAACATGTTCCCGGTTTGCACTCGCAAGGATCTTGTTAATAGTATCGGCCATTTACGGAAGCCCAAGCCTTTGATTAAAAGAACCATTCCCAC GGTTAATGATGATGATGATGGGGCTTGA
AA sequence Show only first row Show all	>Lus10016294 pacid=23145866 polypeptide=Lus10016294 locus=Lus10016294.g ID=Lus10016294.BGIv1.0 annot-version=v1.0 MPSPSVFSNNSFSITVADDDSDDLTGKRARVRKKRNKPMSHRVNNHFPRRFVRFLSRYWVLLIFILALVLLFFEISKFAKEPTVHKVDPKKPSHPNLNRM DRVTRMVGGVREPCLNLLPLDELEFLDIPNGGEVDSPVNNVIYLSEKDVPESVQNATPKSKQIKFNSFSGYPSLEERDKSFVANQTAAVHCGFYSEDGGF KISEADKSYMATCKVVVSTCAFGGGDNLYQPIGMSNASLQKVCYVAFWDDITLAAQDTAGHKIGEDNLIGKWRIVLVQDLPFVDQRLNGKIPKMLGHRLF PNAKYSIWVDSKSQFRRDPLGVLEALLWRTNSVLAISEHGARSSLYDEAKAVVKKNKANPEEVEVQLTQYKNDGMPEDKRMNGKKALNEASIIVREHTAV SNLMMCLWFNEAVRFTSRDQLSFPYVLWRLKVVAKINMFPVCTRKDLVNSIGHLRKPKPLIKRTIPTVNDDDDGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42660			Protein of unknown function (D...		Lus10016294 [exp]	0	1
AT3G16110		ATPDI4, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10025792 [exp]	4.6	0.7774
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10011477 [exp]	4.8	0.8386
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10035162 [exp]	5.7	0.8021
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	6.9	0.7889
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	10.1	0.8177
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	10.6	0.7961
AT4G33945			ARM repeat superfamily protein...		Lus10012060 [exp]	12.1	0.7445
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Lus10031409 [exp]	12.5	0.7917
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10020894 [exp]	13.3	0.7810
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	13.4	0.7828

Compare expression of checked genes

Lus10016294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.