Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74970 248 / 2e-84 TWN3, RPS9 ribosomal protein S9 (.1) AT3G49080 76 / 3e-16 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032862 [exp] 333 / 5e-118 AT1G74970 282 / 1e-97 ribosomal protein S9 (.1) Lus10038852 [exp] 81 / 8e-18 AT3G49080 370 / 9e-126 Ribosomal protein S5 domain 2-like superfamily protein (.1) Lus10014970 [exp] 0 / 1 AT3G49080 274 / 8e-95 Ribosomal protein S5 domain 2-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039600 [exp] 261 / 1e-89 AT1G74970 268 / 4e-92 ribosomal protein S9 (.1) Potri.002G132200 [exp] 254 / 1e-86 AT1G74970 267 / 1e-91 ribosomal protein S9 (.1) Potri.012G144700 [exp] 77 / 2e-16 AT3G49080 353 / 5e-119 Ribosomal protein S5 domain 2-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF00380 [flax] [poplar] Ribosomal_S9 Ribosomal protein S9/S16
Representative CDS sequence Show only first row Show all	>Lus10016295 pacid=23145877 polypeptide=Lus10016295 locus=Lus10016295.g ID=Lus10016295.BGIv1.0 annot-version=v1.0 ATGTCAGTCTCCTCCCTCGCCTCGCCTTTCTATTCTCTCTCTTTGTCATCCCAACTTTCTCAGAAACCATACACCAAGCTGCTTCCCCTCACCAACAAGT CCCCTTCTCTTTCACACCCCCGCAACTACCTCACCCTCAGGGTCTCTGCCGCTGTCTCCTCGCCGTCGGAGCCTCTCAAGGAGCTGGTGAAGTCTAGACT CCCCGGTGGATTCGCCGCCCAAACCATCATCGGCACCGGTCGCCGGAAGTGCTCCATCGCTCGAGTCGTCCTCCAGGAAGGCACTGGCCAAGTCATCATC AATTACCGCGATGCCAAGGACTATCTCCAGGGGAATCCATTGTGGCTACAGTACGTGAAGGTCCCATTGGTGACATTGGGATACGAGAGTAGCTACGATG TGTTCGTGAAAGCTCACGGCGGAGGGCTCTCTGGTCAGGCCCAGGCAATATCGCTGGGAGTTGCTCGGGCATTGCTGAAGGTGAGTGACAGCCACAGACC ACCACTGAAACAGGAAGGGCTTTTGACAAGGGACTCTAGGATTGTGGAGAGGAAGAAGGCTGGTCTCAAGAAAGCTCGCAAGGCTCCCCAGTTCTCTAAG CGTTAA
AA sequence Show only first row Show all	>Lus10016295 pacid=23145877 polypeptide=Lus10016295 locus=Lus10016295.g ID=Lus10016295.BGIv1.0 annot-version=v1.0 MSVSSLASPFYSLSLSSQLSQKPYTKLLPLTNKSPSLSHPRNYLTLRVSAAVSSPSEPLKELVKSRLPGGFAAQTIIGTGRRKCSIARVVLQEGTGQVII NYRDAKDYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAHGGGLSGQAQAISLGVARALLKVSDSHRPPLKQEGLLTRDSRIVERKKAGLKKARKAPQFSK R

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Lus10016295 [exp]	0	1
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018729 [exp]	2.8	0.9168
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	3.7	0.9406
AT4G37510			Ribonuclease III family protei...		Lus10019289 [exp]	4.9	0.9291
AT3G54210			Ribosomal protein L17 family p...		Lus10006999 [exp]	5.7	0.9358
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10000449 [exp]	7.7	0.9094
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	9.2	0.9266
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	9.5	0.9250
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	10.4	0.9184
AT5G51545		LPA2	low psii accumulation2 (.1)		Lus10031131 [exp]	11.2	0.8972
AT1G76760		ATY1, TRX-Y1	thioredoxin Y1 (.1)		Lus10028569 [exp]	11.5	0.9008

Compare expression of checked genes

Lus10016295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.