Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47530 351 / 1e-116 MATE efflux family protein (.1) AT1G12950 275 / 5e-87 RSH2 root hair specific 2 (.1) AT5G38030 270 / 4e-85 MATE efflux family protein (.1) AT3G26590 268 / 2e-84 MATE efflux family protein (.1) AT1G23300 245 / 2e-75 MATE efflux family protein (.1) AT4G00350 234 / 5e-71 MATE efflux family protein (.1) AT4G25640 224 / 7e-68 FFT, ATDTX35 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) AT1G11670 205 / 2e-60 MATE efflux family protein (.1) AT3G21690 201 / 7e-59 MATE efflux family protein (.1) AT1G33110 187 / 2e-54 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010035 [exp] 483 / 2e-168 AT1G47530 665 / 0.0 MATE efflux family protein (.1) Lus10042130 [exp] 397 / 9e-135 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 280 / 9e-89 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 279 / 2e-88 AT3G26590 664 / 0.0 MATE efflux family protein (.1) Lus10006205 [exp] 258 / 1e-80 AT3G26590 686 / 0.0 MATE efflux family protein (.1) Lus10038850 [exp] 248 / 7e-77 AT4G25640 685 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Lus10036851 [exp] 249 / 8e-77 AT3G26590 675 / 0.0 MATE efflux family protein (.1) Lus10042344 [exp] 244 / 3e-75 AT1G47530 521 / 0.0 MATE efflux family protein (.1) Lus10027504 [exp] 244 / 4e-75 AT4G25640 683 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G187100 [exp] 287 / 8e-92 AT3G26590 661 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 282 / 1e-89 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.012G144900 [exp] 232 / 2e-70 AT4G25640 574 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.015G147600 [exp] 224 / 1e-67 AT4G25640 523 / 0.0 FLOWER FLAVONOID TRANSPORTER, detoxifying efflux carrier 35 (.1.2) Potri.002G102100 [exp] 219 / 6e-66 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.002G161200 [exp] 213 / 4e-64 AT4G00350 657 / 0.0 MATE efflux family protein (.1) Potri.007G010200 [exp] 211 / 1e-62 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 209 / 7e-62 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.004G016400 [exp] 205 / 2e-60 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.011G002200 [exp] 202 / 4e-59 AT1G11670 669 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10016296 pacid=23145872 polypeptide=Lus10016296 locus=Lus10016296.g ID=Lus10016296.BGIv1.0 annot-version=v1.0 ATGGAGGCGGCCCTACTCCAATCTGGCGGGAAGAAATTGGAATCCTTGGGAGAGTTTGGAGAAGAGTCAAGGAGGCTATGGAAGATTGGCGGGCCAGCGA TTTTCACCTCCATTGTACAGTACTCCCTAGGCGCCTTGACGCAGACTTTCACTGGCCGTGTGAGTGAGCTGGAGCTGGCCGTTGTCTCGGTAGAGAACTC AGTCATCGCCGGCCTTGCCTTTGGTGTCATGTTGGGGATGGGAAGTGCACTGGAGACGGTGTGCGGGCAAGCATATGGAGCAGGGCAGATAAGGATGTTG GGGATATACATGCAGAGATCATGGCTTATTCTTTTAGCCACCGCTTGGGTATTGGTCCCTGTTTACGTCTTCTCTCCTACTATCCTCATCTTCCTTGGCC AAAGTTTTGACATCTCTCATGCTGCATGGGAATTCACAATCTGTATGCTACCGCAGTTATTTGCATACGCCATCAACTTCCCAATACAGAAGTTCCTTCA AGCGCAGGGCAAAGTTAAAGAGATGACCTCGATATCCGTTGCGGTGCTGCTTTTCCATGTCTTCTCCAGTTGGTTGCTCATCCTCAAACTTGAGTGGGGT TTAGTCGGAGCGGCCATTGTACTCAATGCTTCATGGTGGCTCATAATCATTGCCCAATTAGCTTACATATTCATCACCTACTCGGATGGTGCATGGACTG GCTTCTCTTGGCTTGCTTTCTCCGACCTTTGGGGATTCCTCAACCTTTCCCTTGTCTCTGCTGTTATGCTCTGTGTAAGGGTCTCGAATGAACTTGGAAA AGGAAATGCGGGTGCTGCTAAACTGTCTGTAATAGTGGTGTCAGCTACATCGATTGTGATAGGAGTGGTGTGTATGGTACTGATTTTCACAACAAGAGGT TCCTTCCCTCAACTGTTTACCAGCAGTGCAGCTGTTACTAAGGAAACTAGGAGACTTGCTGCTTTGTTGGCATTCACTTTTCTTCTCAACAGCCTTCAAC TTGTTTTATCCGGGACTTACAAAAGGATCCCTTCTTCTCCGGCCAAGGGCTCGCCGCCTGCAACCTCTGCCCGGTTTCCGGCGAGGCTCCGGCGAGGGTC CAATCATTTTGGAATCGCCGCCGCGGCCTCGAACTTCGCCAACGCCGCCCTCTGGCCATCTCCCGCCGCCAGTAGTGGCACCGAATACGGCCCACGCGCC ACGGAGGAGATCTCGCCTCTCAACGTCACCGCGACCATCTTCTCCCTTCTTTCCGCCGCGAGCGCTGCCGTCGCGTCCTTCAACCACGACGAGTCCTCCG GAGCCTTGGCGATGTCAAGACTTGAAGACCCATATCAGTATCTTTATTTTATTCCAATACTTATTTGTAATTCCCTAAAACTCCAGTGA
AA sequence Show only first row Show all	>Lus10016296 pacid=23145872 polypeptide=Lus10016296 locus=Lus10016296.g ID=Lus10016296.BGIv1.0 annot-version=v1.0 MEAALLQSGGKKLESLGEFGEESRRLWKIGGPAIFTSIVQYSLGALTQTFTGRVSELELAVVSVENSVIAGLAFGVMLGMGSALETVCGQAYGAGQIRML GIYMQRSWLILLATAWVLVPVYVFSPTILIFLGQSFDISHAAWEFTICMLPQLFAYAINFPIQKFLQAQGKVKEMTSISVAVLLFHVFSSWLLILKLEWG LVGAAIVLNASWWLIIIAQLAYIFITYSDGAWTGFSWLAFSDLWGFLNLSLVSAVMLCVRVSNELGKGNAGAAKLSVIVVSATSIVIGVVCMVLIFTTRG SFPQLFTSSAAVTKETRRLAALLAFTFLLNSLQLVLSGTYKRIPSSPAKGSPPATSARFPARLRRGSNHFGIAAAASNFANAALWPSPAASSGTEYGPRA TEEISPLNVTATIFSLLSAASAAVASFNHDESSGALAMSRLEDPYQYLYFIPILICNSLKLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47530			MATE efflux family protein (.1...		Lus10016296 [exp]	0	1
					Lus10002570 [exp]	8.2	0.9008
AT1G78610		MSL6	mechanosensitive channel of sm...		Lus10012516 [exp]	9.2	0.8659
AT3G60730			Plant invertase/pectin methyle...		Lus10028536 [exp]	10.4	0.7910
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	13.5	0.8962
AT3G18960	B3		AP2/B3-like transcriptional fa...		Lus10004924 [exp]	13.7	0.7076
					Lus10005830 [exp]	16.5	0.8962
					Lus10009618 [exp]	19.1	0.8962
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	21.3	0.8962
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10013556 [exp]	23.4	0.8962
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	25.2	0.8962

Compare expression of checked genes

Lus10016296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.