Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 117 / 8e-31 F-box/RNI-like superfamily protein (.1) AT3G23955 44 / 3e-05 F-box family protein (.1.2) AT5G22670 42 / 0.0003 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019144 [exp] 119 / 2e-31 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 114 / 1e-29 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10030569 [exp] 69 / 2e-13 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10028369 [exp] 64 / 4e-12 AT1G13570 66 / 1e-12 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 64 / 1e-11 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 64 / 1e-11 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 62 / 4e-11 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10003016 [exp] 62 / 7e-11 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 61 / 1e-10 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G039700 [exp] 363 / 5e-126 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 349 / 2e-120 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.010G134200 [exp] 124 / 2e-33 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 114 / 2e-29 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 86 / 4e-19 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 46 / 9e-06 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [flax] [poplar] FBD FBD
Representative CDS sequence Show only first row Show all	>Lus10016297 pacid=23145867 polypeptide=Lus10016297 locus=Lus10016297.g ID=Lus10016297.BGIv1.0 annot-version=v1.0 ATGAACTTTGATGGTTTCACTCATCTTAAAATCAATGCCCCAAATCTGCTGTTCTTTGATATTGGCGGCATCTTTGATGATGTGAGTTTCAAGAATACGT GTCAGCTAACTCTTGTTTCCATTGGCTTGTATGTGAATCTGAAAAATGACCGAAATGTGGCTACTGGAAGCTCTAGTAAACTGCTCAGTTTCTTTGCTAA TCTTCCTCATATTAGAAGGCTGGAGGTTCAGAGTTACTTTCTCAAGTACTTGGCCATGGGAAATGTCCCCACCAGGTTGCCAAACCCATGTGTTGATCTG AACTACCTTTCGATACGCATAAATTTCAATGACATGGATGAAAGTGCAGCTGCTCTATGCCTCCTGAAAAGTTCACCTAATCTGCAAGAAGTGGAGATGC TGGCTCGGCCGGAGGAGCAGTCAACTGTAGGAACAGGAAGCAGCTCTTGGGAAGATGAACAGTGGAAGAATCTGTTTCCTCAACTGAAGTTTGTGAAGAT GGTTGGGATCTGCGGTGTTAGAGCTGAGCTAGATTGCATAAACTTTGTACTGTCAAACTCGCCTTTGCTGGAGAAAATGACGATCAAGCCATCATCGGTG GATGGAGGATGGGACTTGATGAAGGAACTGCTGCGTTTCAGGAGGGCATCTGTGCTGGCTGAAATCGTTTATCTAGACCCATAA
AA sequence Show only first row Show all	>Lus10016297 pacid=23145867 polypeptide=Lus10016297 locus=Lus10016297.g ID=Lus10016297.BGIv1.0 annot-version=v1.0 MNFDGFTHLKINAPNLLFFDIGGIFDDVSFKNTCQLTLVSIGLYVNLKNDRNVATGSSSKLLSFFANLPHIRRLEVQSYFLKYLAMGNVPTRLPNPCVDL NYLSIRINFNDMDESAAALCLLKSSPNLQEVEMLARPEEQSTVGTGSSSWEDEQWKNLFPQLKFVKMVGICGVRAELDCINFVLSNSPLLEKMTIKPSSV DGGWDLMKELLRFRRASVLAEIVYLDP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	0	1
AT3G60300			RWD domain-containing protein ...		Lus10009773 [exp]	1.4	0.8967
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	3.2	0.9012
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	3.9	0.8873
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Lus10019506 [exp]	5.0	0.8854
AT1G67910			unknown protein		Lus10034901 [exp]	11.5	0.8643
AT5G11680			unknown protein		Lus10027000 [exp]	12.2	0.8859
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Lus10037084 [exp]	14.5	0.8761
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10000954 [exp]	15.9	0.8763
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	16.5	0.8717
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040727 [exp]	17.3	0.8345

Compare expression of checked genes

Lus10016297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.