Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19270 632 / 0 DA1 DA1 (.1) AT4G36860 555 / 0 DAR1 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) AT2G39830 473 / 9e-164 LRD3, DAR2 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) AT5G66610 336 / 7e-110 DAR7 DA1-related protein 7 (.1.2) AT5G66620 337 / 6e-109 DAR6 DA1-related protein 6 (.1) AT5G17890 311 / 6e-94 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT5G66630 295 / 1e-92 DAR5 DA1-related protein 5 (.1) AT5G66640 279 / 6e-89 DAR3 DA1-related protein 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010033 [exp] 915 / 0 AT1G19270 657 / 0.0 DA1 (.1) Lus10032736 [exp] 759 / 0 AT1G19270 628 / 0.0 DA1 (.1) Lus10018789 [exp] 708 / 0 AT1G19270 575 / 0.0 DA1 (.1) Lus10022486 [exp] 586 / 0 AT4G36860 679 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10016791 [exp] 573 / 0 AT4G36860 669 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Lus10040258 [exp] 475 / 2e-161 AT2G39830 653 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10004690 [exp] 390 / 5e-131 AT2G39830 560 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Lus10000138 [exp] 275 / 3e-91 AT4G36860 203 / 2e-63 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132700 [exp] 725 / 0 AT1G19270 669 / 0.0 DA1 (.1) Potri.014G039900 [exp] 724 / 0 AT1G19270 654 / 0.0 DA1 (.1) Potri.005G128900 [exp] 590 / 0 AT4G36860 696 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.007G032500 [exp] 581 / 0 AT4G36860 675 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.005G128800 [exp] 566 / 0 AT4G36860 662 / 0.0 DA1-RELATED PROTEIN 1, LIM domain-containing protein (.1) Potri.010G197500 [exp] 481 / 5e-167 AT2G39830 688 / 0.0 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1) Potri.T124504 [exp] 177 / 1e-51 AT1G19270 182 / 3e-53 DA1 (.1) Potri.009G111446 [exp] 91 / 6e-22 AT2G39830 92 / 7e-23 LATERAL ROOT DEVELOPMENT 3, DA1-related protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF12315 [flax] [poplar] DA1-like Protein DA1 CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10016298 pacid=23145851 polypeptide=Lus10016298 locus=Lus10016298.g ID=Lus10016298.BGIv1.0 annot-version=v1.0 ATGGGTTGGCTTAGCAAGATCTTCAAAGGGTCTAGCCATAGCATTTCTGAAGGCCATTATCATGACAATGATGAAGTAACTCATGATCTTCATTCACCGT CTCCATCCGGGGATGTCTCGTCGTACCAGGATGATGAAGAGATAGATCGCGCTATTGCTCTATCGCTTTTAGAGGAGAGTCAACAAGGGAAACATGTGAT TGATACTGAGACTCAATTACAAGAAGATGAACAGCTTGCTAGAGCCCTACAAGAAAGCCTGAGCGTCGATGCTCCCCCTAACCCACACCCTCCCCCGCAA TATAAACATCCACATGCACATCCAGGAAATGTATATCAACCAGTTCCAGTACATTTCTCGATGGGTTTCAGAATATGTGCTGGTTGTAGTAATGAGATCG GTGCTGGAAGATTTCTACATTGTCTCAATGCGTATTGGCATCCAGAATGTTTCCGCTGCCATGTCTGCAACATACCTATTTCGGATTATGAGTTCTCCAT GTCTGGCAATTACCCCTATCACAAAACATGCTACAAGGAGCAGTACCATCCCAAATGTGATGTTTGCAAGCACTTTATTCCAACCAACCTGGCTGGACTT ATTGAGTATAGAGCACATCCTTTTTGGAACCAGAAATATTGCCCTACTCATGAACATGACAGTACCCCACGATGCTGCAGCTGTGAGAGAATGGAGCCTC AAGATACAGGATATGTTCCACTTAATGATGGTCGAAAGCTGTGTTTGGAGTGCCTGGATTCAGCAGTCATGGATACCAATCAATGCCAACCACTTTACGA TGACATACAGCTATTTTATGAAAGTTTAGACATGAAGGTGAAGCAGTATGTTCCCTTACTTCTTGTCGAGAGACAAGCACTAAATGAAGCCAGAGAGGGA GAAAAGAACGGTCATTCTCACATGCCAGAAACCAGAGGCCTCTGCCTTTCCGAGGAGCAAACAATCAGCACAGTACGGAGACCAAAATCTGGTGGACACC GAACCATGGACATGATAACGGAGCCTTATAAACTCACACGACGATGTGATGTCACCGCCATTCTCATATTGTACGGTCTCCCAAGATTACTTACCGGATC TATCCTAGCTCACGAGATGATGCACGCATGGATGCGACTTAATGGTTTCCAACCTCTAAGTCAAGACGTTGAAGAGGGCATTTGCCAGGTGCTTGCACAC ATGTGGTTAGATTCGCAGCTGAGCTTTGAAACATCATCGTCGTCAGCTGGTTCGAGAAACAGTTCAAGGCCGCCATTTGAGAAGAAGCTAGGAGCTTTCT TCAAGCATCAGATCGAGTCAGACAGTTCTCCAGTGTATGGAGATGGGTTCAGAGCCGGTCTGCAAGCAATACGTAAATATGGGCTTCAAAGAACTCTTGA ACATATCGGAATGACTGGGAGGTTCCCTTTCTGA
AA sequence Show only first row Show all	>Lus10016298 pacid=23145851 polypeptide=Lus10016298 locus=Lus10016298.g ID=Lus10016298.BGIv1.0 annot-version=v1.0 MGWLSKIFKGSSHSISEGHYHDNDEVTHDLHSPSPSGDVSSYQDDEEIDRAIALSLLEESQQGKHVIDTETQLQEDEQLARALQESLSVDAPPNPHPPPQ YKHPHAHPGNVYQPVPVHFSMGFRICAGCSNEIGAGRFLHCLNAYWHPECFRCHVCNIPISDYEFSMSGNYPYHKTCYKEQYHPKCDVCKHFIPTNLAGL IEYRAHPFWNQKYCPTHEHDSTPRCCSCERMEPQDTGYVPLNDGRKLCLECLDSAVMDTNQCQPLYDDIQLFYESLDMKVKQYVPLLLVERQALNEAREG EKNGHSHMPETRGLCLSEEQTISTVRRPKSGGHRTMDMITEPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWMRLNGFQPLSQDVEEGICQVLAH MWLDSQLSFETSSSSAGSRNSSRPPFEKKLGAFFKHQIESDSSPVYGDGFRAGLQAIRKYGLQRTLEHIGMTGRFPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19270		DA1	DA1 (.1)		Lus10016298 [exp]	0	1
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10004970 [exp]	6.6	0.7842
					Lus10024028 [exp]	8.2	0.6956
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	10.2	0.7657
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10001304 [exp]	26.7	0.7664
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030177 [exp]	27.1	0.7101
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10020357 [exp]	27.5	0.6908
AT5G43680			unknown protein		Lus10004356 [exp]	33.0	0.7229
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	33.7	0.7563
AT1G01770			unknown protein		Lus10036349 [exp]	37.1	0.7246
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	38.9	0.6775

Compare expression of checked genes

Lus10016298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.