Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23770 328 / 7e-104 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT2G33580 216 / 4e-61 Protein kinase superfamily protein (.1) AT3G01840 187 / 6e-51 Protein kinase superfamily protein (.1) AT1G24030 172 / 6e-48 Protein kinase superfamily protein (.1.2) AT1G69790 164 / 7e-45 Protein kinase superfamily protein (.1) AT1G49730 169 / 1e-44 Protein kinase superfamily protein (.1.2.3.4) AT1G14370 163 / 5e-44 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT4G02010 165 / 7e-43 Protein kinase superfamily protein (.1) AT3G55450 159 / 9e-43 PBL1 PBS1-like 1 (.1.2) AT3G21630 162 / 1e-42 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032735 [exp] 695 / 0 AT2G23770 305 / 1e-94 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10018788 [exp] 690 / 0 AT2G23770 312 / 3e-97 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10022488 [exp] 427 / 1e-141 AT2G23770 391 / 2e-128 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10019661 [exp] 348 / 6e-111 AT2G23770 483 / 8e-164 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10016794 [exp] 254 / 3e-79 AT2G23770 219 / 2e-66 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10000577 [exp] 237 / 4e-69 AT2G23770 490 / 1e-166 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10008586 [exp] 232 / 1e-66 AT2G33580 594 / 0.0 Protein kinase superfamily protein (.1) Lus10039406 [exp] 223 / 2e-65 AT2G33580 229 / 4e-68 Protein kinase superfamily protein (.1) Lus10041171 [exp] 220 / 3e-63 AT2G33580 224 / 1e-64 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040000 [exp] 556 / 0 AT2G23770 345 / 1e-110 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 462 / 2e-155 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.007G032100 [exp] 360 / 2e-115 AT2G23770 513 / 6e-175 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G160600 [exp] 300 / 5e-93 AT2G33580 217 / 8e-62 Protein kinase superfamily protein (.1) Potri.010G078700 [exp] 290 / 3e-89 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 248 / 4e-73 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G332800 [exp] 245 / 7e-72 AT3G01840 471 / 4e-158 Protein kinase superfamily protein (.1) Potri.005G259600 [exp] 237 / 3e-69 AT2G33580 637 / 0.0 Protein kinase superfamily protein (.1) Potri.002G226600 [exp] 187 / 2e-51 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.008G187500 [exp] 186 / 1e-50 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10016299 pacid=23145862 polypeptide=Lus10016299 locus=Lus10016299.g ID=Lus10016299.BGIv1.0 annot-version=v1.0 ATGTACACTCTTTTCCGCTTTCTGTTACTATTACTAGTACTAACCCTCGTACCGCCGCCAGTCGCCGCCGTTCAGAACTACTCCGGACTTTCAGCATTCG ACTGCGACGTCATCGACGATGACCCATCACCCTCCCCTGCATTTCTCTACACCTGCAACGGCCTCAACGCTTCCTGCCAATCCTTCCTCATCTTCAGATC CAAGCCCCGTTACACCTCCGTCCACCAAATCTCCGACCTGACCTCTTCCGACGCCGACCAAATCGCCCAACTCAACGGCGTCCATAACGGCCCGTCGTCA GAATTCGTAGCCGACAAGGACGTAATCGTGCCAATAAGCTGCTCCTGCTCAGGAAATAGTAGCAACAGCAAAAGATACGACTACTACCAGTCCAACACGA GGTTCACTCTTACGAGCTCTGAGGTGACTTATTTCGTCGTGGCGACGGACACATTCGAAGGATTAGCGAGCTGCGCGGCGGTCAAGCAGGTCAATCCATG GCCGGATCTCGAACTGTCTCCCGGAATTGAAATCCAGGTCCCTCTCCGATGTGCTTGTCCGACGAAGGACCAGGTCTCAGGCGGGGTGAATTACCTCCTG ACGTATCCGATTAGCTCCGACGATAGCCTGCCGGATTTAGCCAGCAGATTCAATGCCACGGAGGAGAGTATCCTGGAAGCTAATACCCTGACCAGAAACG GAAATGAAAACCCTAATCTGGTTCCAGGTACCACAATTTTGATTCCACTTTCAGGATATCCCCAAACTTTAATGACTAGAATTCACCAAGAACTCCCTGG AAACGGAATTCCTCCTCCTGCTGTGTATAACCCAGAAAGAGAAAGGAGGAGGTCAAAGAAGCATATAATCGAGCTGGCCGGAGTTGGAGCAGCCTGCTTC TTGCTTCTGGTGAGCGTAGCTGTGGCGGTGGCGTTTGTTATTCAAGGGAAGATGAGGAACAAGAGGACGAAGAAGAATAACAAGGATGTTGGGGAGATGA GGAAAGAAAGGGCTAAAGAAGATCTTCGATTCGGGTTAGCCAGCTGCGAGAGAGTTCTCAAGGTATATGGGATTGATGAAGTGAAGGAGGCAACTGGAAA TTTCAGCAGCAAAAACAGAATCAAAGGTTGTGTGTATAGAGGGGAGTTCGATGGGAATGTATTGGGTGTGAAGAAGATGAGTAGAGATGCAGACGTTTCA CAGGAAGTGAACATTCTGATGAAGGTTAACCATTTCAATGTAATAAAACTCCACGGAATCTGCGATGATGGGCAGTGTTTCTACCTTGTTTCAGAGTACA TGGAATCAGGGTGTTTGAAAGATTGGCTGAGAAATGAGAAGGCGAAGGAAGGAAGGTGGGAGACGAGGATTCGGATGGCTCTAGATGTTGCGAATGGGCT TCACTATCTTCACAACTTCACTGAGCCTGCTTATGTTCACAAGGACATCAAGAGTAGCAATGTGTTGCTGAACAGCAACCTTAGAGCCAAGATCACCAAT TTCAGCCTGGCAAGAGCAGCGGTGAGGGACTCGGTGCTCACGCCCCACTTGATTGGGACAAGAGGATACTTGGCACCGGAGTATCTCGAAACTGGAGAGG TAACACCTAAGGTGGACGTGTATGCATTTGGTGTGGTGTTGTTGGAGCTGATAACGGGGAAAGAAGCCGTGTTGGGTAGAGGAGGGAATGACAAGGAAAC AAGTCTATTGTCGACCACCATGGTTTGCCTGTATGAGAAGGGAGATTTAGAAAGGGATTGGAGTTTGTATGTTGACTGTAGCCTACACAAAGGTGGGATT CAAGAAGAAGAAGCTGGACTTGCTCTATTTAGAGTGAGCTTGGGTTGCTTGCGAAAAGAAGCTGAAACCAGGCCTAGTATGGAAGAGATTGTATCCAGCC TAGTCAAAATCCTCACGGATTTGAAAACACCAACAACCCATCAATCTTGA
AA sequence Show only first row Show all	>Lus10016299 pacid=23145862 polypeptide=Lus10016299 locus=Lus10016299.g ID=Lus10016299.BGIv1.0 annot-version=v1.0 MYTLFRFLLLLLVLTLVPPPVAAVQNYSGLSAFDCDVIDDDPSPSPAFLYTCNGLNASCQSFLIFRSKPRYTSVHQISDLTSSDADQIAQLNGVHNGPSS EFVADKDVIVPISCSCSGNSSNSKRYDYYQSNTRFTLTSSEVTYFVVATDTFEGLASCAAVKQVNPWPDLELSPGIEIQVPLRCACPTKDQVSGGVNYLL TYPISSDDSLPDLASRFNATEESILEANTLTRNGNENPNLVPGTTILIPLSGYPQTLMTRIHQELPGNGIPPPAVYNPERERRRSKKHIIELAGVGAACF LLLVSVAVAVAFVIQGKMRNKRTKKNNKDVGEMRKERAKEDLRFGLASCERVLKVYGIDEVKEATGNFSSKNRIKGCVYRGEFDGNVLGVKKMSRDADVS QEVNILMKVNHFNVIKLHGICDDGQCFYLVSEYMESGCLKDWLRNEKAKEGRWETRIRMALDVANGLHYLHNFTEPAYVHKDIKSSNVLLNSNLRAKITN FSLARAAVRDSVLTPHLIGTRGYLAPEYLETGEVTPKVDVYAFGVVLLELITGKEAVLGRGGNDKETSLLSTTMVCLYEKGDLERDWSLYVDCSLHKGGI QEEEAGLALFRVSLGCLRKEAETRPSMEEIVSSLVKILTDLKTPTTHQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23770			protein kinase family protein ...		Lus10016299 [exp]	0	1
AT3G01270			Pectate lyase family protein (...		Lus10037207 [exp]	4.0	0.8118
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	6.0	0.8246
AT1G12390			Cornichon family protein (.1)		Lus10030270 [exp]	6.3	0.7936
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	7.3	0.8534
AT3G49400			Transducin/WD40 repeat-like su...		Lus10008595 [exp]	8.7	0.8448
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10025747 [exp]	12.6	0.7988
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011537 [exp]	16.4	0.8046
AT2G41990			unknown protein		Lus10003341 [exp]	23.7	0.7806
AT1G54385			ARM repeat superfamily protein...		Lus10002627 [exp]	24.2	0.7892
					Lus10037427 [exp]	32.6	0.7249

Compare expression of checked genes

Lus10016299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.