Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19300 463 / 1e-164 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G50760 454 / 4e-161 GATL2 galacturonosyltransferase-like 2 (.1) AT1G70090 377 / 3e-130 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G28340 376 / 4e-130 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT4G02130 374 / 2e-129 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G13250 372 / 8e-129 GATL3 galacturonosyltransferase-like 3 (.1) AT1G24170 372 / 2e-128 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G62660 369 / 2e-127 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 365 / 6e-126 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 363 / 2e-125 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018801 [exp] 540 / 0 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10032728 [exp] 538 / 0 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10002440 [exp] 377 / 2e-129 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10041489 [exp] 372 / 1e-128 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1) Lus10010727 [exp] 372 / 1e-128 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 372 / 2e-128 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10034012 [exp] 368 / 3e-127 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10034274 [exp] 368 / 5e-127 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10012765 [exp] 367 / 1e-126 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040300 [exp] 535 / 0 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 535 / 0 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 486 / 1e-173 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 478 / 1e-170 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.010G038300 [exp] 378 / 9e-131 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.002G200200 [exp] 371 / 3e-128 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.008G192600 [exp] 370 / 1e-127 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G116900 [exp] 367 / 9e-127 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G129400 [exp] 366 / 1e-126 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 362 / 9e-125 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01501 [flax] [poplar] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Lus10016301 pacid=23145869 polypeptide=Lus10016301 locus=Lus10016301.g ID=Lus10016301.BGIv1.0 annot-version=v1.0 ATGCCTGCATTTCTCTGTTCTTTCATTTTCATTTTCATTCTTCTTCTACCTTTGACTTCCAATGGATCCCTCACTTTCAAAGAAGCTCCCCAGTTTTACA ATTCCCCTGACTGCCCCTCCGCCGCTGACCATGACGCCATCTTCTGTTCAGATCGCGCCGTCCACGTGGCTATGACCTTAGACACCGCCTACCTCCGCGG ATCCATGGCCGCAATTCTCTCTGTTCTCCAGCACTCCTCCTGCCCGCAGAACATAGCTTTCCATTTCGTAGCATCAGAATCAGCAAACGCCTCCTCTGCT CTACGCTCCACCATCTCTTCTTCATTCCCTTACCTCAATTTCCGAGTCTACACCTTCGACGACTCCTCCGTCTCCCGACTCATCTCCACCTCAATCCGAT CCGCCCTCGACTGCCCTCTCAACTACGCCAGAAGCTACTTGGCCAACGTACTCCCGCCTTGTGTTCGACGAATTGTCTACCTCGATTCCGACCTCGTCCT CGTCGACGACATCGCCAAACTCGCCAGAACTCCGCTCGGCGACACCGCCGTGCTCGCCGCTCCGCAGTACTGCAATGCCAATTTCACCTTCTACTTCACT CCGACCTTCTGGTCCAATCCGTCTCTTTCGTTGACCTTCGCCGACAGGAAGGCCTGTTATTTCAATACCGGGGTTATGGTGATTGACCTTGACAGATGGA GACAAGGGGATTATACTACTAAGATCGAGGAGTGGATGGAGGTGCAGAAGAGGATGAGGATCTACGAGTTGGGATCCTTGCCGCCCTTTTTGCTAGTGTT CGCCGGGAATATAGTGCCCGTGGATCACCGGTGGAATCAGCACGGTTTAGGAGGGGACAATTTCAGAGGACTGTGCCGGAATCTGCATCCAGGTCCGGTG AGTCTGTTGCATTGGAGTGGGAAAGGGAAACCGTGGGCTCGCCTGGACGCCAATCGACCGTGTCCTTTGGATGCCCTATGGGCTCCCTACGATCTCTTGC AGACTCCATTGGCTTTGGATTCCTGA
AA sequence Show only first row Show all	>Lus10016301 pacid=23145869 polypeptide=Lus10016301 locus=Lus10016301.g ID=Lus10016301.BGIv1.0 annot-version=v1.0 MPAFLCSFIFIFILLLPLTSNGSLTFKEAPQFYNSPDCPSAADHDAIFCSDRAVHVAMTLDTAYLRGSMAAILSVLQHSSCPQNIAFHFVASESANASSA LRSTISSSFPYLNFRVYTFDDSSVSRLISTSIRSALDCPLNYARSYLANVLPPCVRRIVYLDSDLVLVDDIAKLARTPLGDTAVLAAPQYCNANFTFYFT PTFWSNPSLSLTFADRKACYFNTGVMVIDLDRWRQGDYTTKIEEWMEVQKRMRIYELGSLPPFLLVFAGNIVPVDHRWNQHGLGGDNFRGLCRNLHPGPV SLLHWSGKGKPWARLDANRPCPLDALWAPYDLLQTPLALDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	0	1
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10010789 [exp]	1.0	0.9854
AT2G41610			unknown protein		Lus10030172 [exp]	2.0	0.9812
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10010790 [exp]	2.4	0.9780
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10013828 [exp]	5.3	0.9780
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	6.5	0.9604
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10027888 [exp]	7.3	0.9765
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	9.5	0.9767
AT3G52480			unknown protein		Lus10029407 [exp]	9.7	0.9607
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Lus10036433 [exp]	9.9	0.9763
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	10.0	0.9745

Compare expression of checked genes

Lus10016301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.