Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50760 95 / 6e-25 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 86 / 2e-21 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G02720 62 / 1e-12 GATL5 galacturonosyltransferase 5 (.1.2) AT3G06260 61 / 2e-12 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 61 / 2e-12 GATL3 galacturonosyltransferase-like 3 (.1) AT1G70090 61 / 3e-12 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT3G28340 59 / 7e-12 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT1G24170 57 / 3e-11 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G02130 54 / 6e-10 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT3G62660 50 / 1e-08 GATL7 galacturonosyltransferase-like 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016301 [exp] 150 / 3e-46 AT1G19300 506 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10010790 [exp] 141 / 6e-45 AT3G50760 112 / 1e-30 galacturonosyltransferase-like 2 (.1) Lus10032728 [exp] 100 / 1e-26 AT1G19300 515 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10018801 [exp] 100 / 1e-26 AT1G19300 518 / 0.0 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10034274 [exp] 63 / 3e-13 AT1G13250 489 / 9e-175 galacturonosyltransferase-like 3 (.1) Lus10010025 [exp] 62 / 8e-13 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10000262 [exp] 62 / 8e-13 AT3G62660 405 / 2e-141 galacturonosyltransferase-like 7 (.1) Lus10010727 [exp] 62 / 1e-12 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10029215 [exp] 61 / 3e-12 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G132900 [exp] 95 / 7e-25 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.014G040300 [exp] 94 / 2e-24 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 89 / 1e-22 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1) Potri.005G128000 [exp] 86 / 3e-21 AT3G50760 463 / 9e-165 galacturonosyltransferase-like 2 (.1) Potri.008G192600 [exp] 64 / 2e-13 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.010G129400 [exp] 63 / 4e-13 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.010G038300 [exp] 60 / 4e-12 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G116900 [exp] 59 / 1e-11 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 58 / 2e-11 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.002G200200 [exp] 56 / 1e-10 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016302 pacid=23145856 polypeptide=Lus10016302 locus=Lus10016302.g ID=Lus10016302.BGIv1.0 annot-version=v1.0 ATGCCTGCATTTCTCTGTTCTTTCATTTTCATTTTCATTCTTCTTCTACCTTTGACTTCCAATGGATCCCTCACTTTCAAAGAAGCTCCCCAGTTTTACA ATTCCCCTGACTGCCCCTCCGCCGCTGACCATGACGCCATCTTCTGTTCAGATCGCGCAGTCCCTGTGGCGATGACCTTAGACACCGCCTACCTCCGCGG CTCCATGGCCGCTATCCTCTCAGTTCTCCAGCACTACTCCTGCCCACAGAACATCGCATAA
AA sequence Show only first row Show all	>Lus10016302 pacid=23145856 polypeptide=Lus10016302 locus=Lus10016302.g ID=Lus10016302.BGIv1.0 annot-version=v1.0 MPAFLCSFIFIFILLLPLTSNGSLTFKEAPQFYNSPDCPSAADHDAIFCSDRAVPVAMTLDTAYLRGSMAAILSVLQHYSCPQNIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	0	1
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	1.4	0.9696
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	1.4	0.9663
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10019377 [exp]	3.5	0.9575
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	4.5	0.9502
AT1G76250			unknown protein		Lus10012274 [exp]	5.7	0.9649
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	7.2	0.9607
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	7.9	0.9572
AT1G11410			S-locus lectin protein kinase ...		Lus10042939 [exp]	8.5	0.9415
AT3G25290			Auxin-responsive family protei...		Lus10025878 [exp]	8.8	0.9469
AT5G15870			glycosyl hydrolase family 81 p...		Lus10042526 [exp]	9.5	0.9441

Compare expression of checked genes

Lus10016302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.