Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42620 1288 / 0 metalloendopeptidases;zinc ion binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010792 [exp] 324 / 3e-105 AT5G42620 312 / 9e-101 metalloendopeptidases;zinc ion binding (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G133300 [exp] 1387 / 0 AT5G42620 1397 / 0.0 metalloendopeptidases;zinc ion binding (.1.2) Potri.014G040800 [exp] 1352 / 0 AT5G42620 1354 / 0.0 metalloendopeptidases;zinc ion binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01457 [flax] [poplar] Peptidase_M8 Leishmanolysin
Representative CDS sequence Show only first row Show all	>Lus10016304 pacid=23145865 polypeptide=Lus10016304 locus=Lus10016304.g ID=Lus10016304.BGIv1.0 annot-version=v1.0 ATGAAACAGATTGTCTTAATAATATTTTGCATCCAAGCTTCTGAAACGCCACCATACAATCCGCAATTGCAAAGCACAGACAAAGGAAGTGAGAGCGTAG CCTCGCATTCTTGCATTCATGATCAGATAATTGAACAGAGGAAGCGCCCGGGTCGAAATGTGTATTCTGTAACCCCACAAGTTTACAGTCACATTGGTAT AGCTGAAACCCTTAATCGAAAAGGCAGGGCGTTGCTTGGAGTTTCAGAATTGTTGGTGGAGCAACATAAAGTAAAACAGCCTATTAGGATATTCTTAAAT TATGATGCTGTTGGACATTCTCCTGATAGAGATTGCCGGAAAGTTGGCCATATAGTGAAGCTCGGAGAGCCTCCAGTGTCTTCTCTTACTGAAACTCGTT GCAATCCTCATGCTGATCCTCCTATTTACGGTGACTGCTGGTACAACTGTACTATAGATGATTTATCTGGGGAGGACAAGAAGCGTCGCCTTCGCAAGGC TTTAGGGCGGACAGCTGATTGGTTTAGGAGTGCATTAGCAGTTGAGCCTGTGAAAGGGAACTTACGGTTAAGTGGGTATTCAGCATGTGGACAAGACGGC GGAGTTCAACTTCCACGAGCTTATGTGGGAGAGGGTGTTGCTAATGCGGACTTGGTACTACTGGTGACAACAAGACCCACCACTGGCAACACACTTGCAT GGGCTGTGGCATGTGAACGTGATCAATGGGGTCGTGCAATAGCTGGACATGTGAATGTTGCTCCTCGCCATTTAACAGCTGAAGCAGAAACATTACTTTC AGCTACCCTTATTCATGAGGTTATGCATGTTCTTGGTTTCGATCCTCATGCCTTCACCCATTTTAGGGATGAGAGAAAGAGAAGGCGTACACAGGTTACT GAACAAGTTATGGATGAAAAACTTGGGAGGATGGTGACTCGTGTGGTGCTTCCACGTGTTGTGATGCACTCAAGGCATCATTATGGGGCATTCTCCCGTA ATTTTACTGGATTGGAACTTGAGGACGGTGGAGGTCGTGGCACATCAGGGTCTCACTGGGAGAAAAGGCTTCTTATGAATGAGATCATGACTGGGTCTGT GGATACCCGATCTGTAGTATCCAGAATGACGTTGGCCTTATTGGAGGATAGTGGATGGTACCAAGCCAACTATAGTATGGCAGACCGTCTTGATTGGGGT CTCAACCAAGGAACCGATTTTGTTACTGCTCCTTGTAACCAATGGAAGGGGGCATATCATTGCAATACAACCCATTTATCTGGTTGTACTTATAACAGGG AAGCAGAGGGTTATTGTCCAATTCTAAGTTATAGTGGTGATCTTCCACAGTGGGCTCGTTACTTTCCACAGGCAAATAAAGGTGGGCAGTCCTCGCTTGC TGATTATTGTACTTATTTTGTGGCCTATTCTGATGGATCATGTACTGACACCCATAGTGCACGAGCACCAGACAGAATGCTAGGCGAAGTGCGTGGGAGC AACTCCCGGTGTATGGCGTCTTCATTAGTACGTACTGGCTTTGTGAGAGGTTCAATGACTCAAGGAAATGGGTTTTGGAAACCACTTGAGTCTCCTGGAT TTAATGGTGAACTCATCTGCCCAGCCTATCATGAACTCTGTGTTACAGATCCTCTCCCTGTATCTGGTCAATGCCATAAATCATGCAACTTCAATGGCGA TTGTGTCGATGGGAGGTGCCACTGTTTCCTAGGTTATCATGGTCATGATTGCAGTAAACGAACCTGCCCTGGTAATTGCAACGGAAATGGCAAGTGCCTA GGAGATGGTGTCTGCAAGTGCAGAAAAGGTTACACTGGCGTTGACTGTGTCACTGCTATCTGTGACGAACAATGCAGCCTTCATGGAGGAGTGTGTGACA ACGGTGTTTGTGAATTTCGATGTTCAGACTATGCAGGCTATACGTGCCAAAACAGTTCCTCTCTTCTGTCGAGTCTTTCAGTTTGCAAAGATGTGTTGGA GAGAGACATGTCGAGCCAACACTGTGCGCCCAGCGAATCAAGCATACTGCAACAACTAGAAGAAGTTGTTGTCATGCCAAATTACCATAGATTATTCCCA GGTGGTGCTCGTAAGCTATTCAACCTATTCGGAAGCAGCTATTGTGACGCAGCTGCTAAACGACTAGCGTGCTGGATCTCTATTCAAAAGTGTGATAAAG ACGGCGACAACAGGCTGCGAGTTTGCCATTCAGCGTGCATGGCCTACAACTCAGCATGCGGGGCATCACTCGACTGCTCTGACCAAACCCTATTCAGCAG TAAAGAAGAAGGCGAAGGTCAGTGCACAGGAGTCGGGGAAATGAAAGTATCGTGGTTGAGTAGATTGCGGGTTATGCTGGTTTGGAGTAGTACTTCATTG AAAGGAAGTTTGTAA
AA sequence Show only first row Show all	>Lus10016304 pacid=23145865 polypeptide=Lus10016304 locus=Lus10016304.g ID=Lus10016304.BGIv1.0 annot-version=v1.0 MKQIVLIIFCIQASETPPYNPQLQSTDKGSESVASHSCIHDQIIEQRKRPGRNVYSVTPQVYSHIGIAETLNRKGRALLGVSELLVEQHKVKQPIRIFLN YDAVGHSPDRDCRKVGHIVKLGEPPVSSLTETRCNPHADPPIYGDCWYNCTIDDLSGEDKKRRLRKALGRTADWFRSALAVEPVKGNLRLSGYSACGQDG GVQLPRAYVGEGVANADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFTHFRDERKRRRTQVT EQVMDEKLGRMVTRVVLPRVVMHSRHHYGAFSRNFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSRMTLALLEDSGWYQANYSMADRLDWG LNQGTDFVTAPCNQWKGAYHCNTTHLSGCTYNREAEGYCPILSYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTHSARAPDRMLGEVRGS NSRCMASSLVRTGFVRGSMTQGNGFWKPLESPGFNGELICPAYHELCVTDPLPVSGQCHKSCNFNGDCVDGRCHCFLGYHGHDCSKRTCPGNCNGNGKCL GDGVCKCRKGYTGVDCVTAICDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSSLLSSLSVCKDVLERDMSSQHCAPSESSILQQLEEVVVMPNYHRLFP GGARKLFNLFGSSYCDAAAKRLACWISIQKCDKDGDNRLRVCHSACMAYNSACGASLDCSDQTLFSSKEEGEGQCTGVGEMKVSWLSRLRVMLVWSSTSL KGSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42620			metalloendopeptidases;zinc ion...		Lus10016304 [exp]	0	1
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	3.3	0.8027
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10016576 [exp]	12.7	0.7674
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10011814 [exp]	13.0	0.7704
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	14.3	0.7451
AT2G38610			RNA-binding KH domain-containi...		Lus10003241 [exp]	15.4	0.6753
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	16.6	0.7159
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016776 [exp]	18.4	0.7176
AT4G00840			DHHC-type zinc finger family p...		Lus10030211 [exp]	19.0	0.6973
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	19.0	0.7278
AT2G41740		ATVLN2, VLN2	villin 2 (.1)		Lus10031066 [exp]	19.1	0.7457

Compare expression of checked genes

Lus10016304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.