Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23790 246 / 8e-80 Protein of unknown function (DUF607) (.1) AT5G42610 239 / 3e-77 Protein of unknown function (DUF607) (.1) AT4G36820 218 / 1e-68 Protein of unknown function (DUF607) (.1) AT5G66650 185 / 3e-56 Protein of unknown function (DUF607) (.1) AT1G09575 114 / 2e-29 Protein of unknown function (DUF607) (.1) AT1G57610 114 / 3e-29 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010793 [exp] 563 / 0 AT5G42610 270 / 2e-89 Protein of unknown function (DUF607) (.1) Lus10016799 [exp] 248 / 4e-80 AT2G23790 362 / 1e-124 Protein of unknown function (DUF607) (.1) Lus10022496 [exp] 244 / 3e-78 AT2G23790 371 / 2e-128 Protein of unknown function (DUF607) (.1) Lus10019663 [exp] 226 / 4e-72 AT2G23790 313 / 4e-106 Protein of unknown function (DUF607) (.1) Lus10000580 [exp] 221 / 5e-70 AT2G23790 314 / 1e-106 Protein of unknown function (DUF607) (.1) Lus10034435 [exp] 137 / 3e-37 AT1G57610 335 / 6e-115 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10019127 [exp] 102 / 4e-25 AT1G57610 229 / 2e-75 Protein of unknown function (DUF607) (.1), Protein of unknown function (DUF607) (.2), Protein of unknown function (DUF607) (.3) Lus10005312 [exp] 45 / 2e-06 AT5G66650 70 / 5e-16 Protein of unknown function (DUF607) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041000 [exp] 341 / 1e-116 AT5G42610 288 / 3e-96 Protein of unknown function (DUF607) (.1) Potri.002G133400 [exp] 330 / 2e-112 AT2G23790 290 / 1e-96 Protein of unknown function (DUF607) (.1) Potri.007G031400 [exp] 243 / 2e-78 AT2G23790 333 / 1e-113 Protein of unknown function (DUF607) (.1) Potri.005G127800 [exp] 230 / 3e-73 AT2G23790 335 / 2e-114 Protein of unknown function (DUF607) (.1) Potri.019G133400 [exp] 120 / 3e-31 AT1G09575 317 / 3e-108 Protein of unknown function (DUF607) (.1) Potri.013G161300 [exp] 116 / 7e-30 AT1G09575 316 / 8e-108 Protein of unknown function (DUF607) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04678 [flax] [poplar] MCU Mitochondrial calcium uniporter
Representative CDS sequence Show only first row Show all	>Lus10016305 pacid=23145847 polypeptide=Lus10016305 locus=Lus10016305.g ID=Lus10016305.BGIv1.0 annot-version=v1.0 ATGGCGCTTCGGAAATTGTTCTCCAAGCGTCTCCCCGCCGTCGGTCACTTGGCGCCTTCGCCGGCCGTCCAATACTCGGTGAATCCGAATTCCGCGAAAT CGAACCTACACCAGGAGCTCCAGGAAGTCGCAACCAGCAGACTCAATTGGAAGCGTTTTATCCACCGCACGGCGCTGAGGAACCATTTGCCGGAGTTCCT CTCCTTGCCCGTCGGAGATAAGCTGCGGGAGAAACTCAGGCTCGTCAACATAGCCGACGATCGGCTACAGTGGACTGGACTCAATCCACCTCCTCCAGCG ATCGGCCGACGCGGTGTTTCTGTTGAGGAAACGAGGAAGATCTTAAGGCTCGCTCAGATGGAGAAATTAAAAGCGAGGCTGAGCTTGATCTCGACAAGCT CGATCCCGCTGTCGGAGTTCACCCAGATCTGCGTTCAGGAATGCGGAAACGAAGATCAAGGCGTCGAATTCGCCAAAAAGCTCGACGAGTCCGGTAACGT CATCGTTTTGGGGAGCATCGTCTTTCTCCGGCCAGAGCAGGTTGCGAAATCGATAGAAAGCATAATCTCACGGTCAATAATAGCACACACAAACGATCCA AGGAAGAGAACACTGGAAGAGATGCACAAGGAAAAGTCCAAAATCGACGAAAAAGCATGGGCCCAAGTTCGAGCTGAGCTCTACTGCGGATTGGGCTTTT TAACGGCCCAGACGCTGGGTTTTATGAGGCTGACGTTCTGGGAATTGAGTTGGGATGTGATGGAGCCTATATGCTTTTTCACCACTTCTCTCTATTTCGG GATGGCCTACACTTTCTTCCTCAGAACCTCCATTGAACCTACCTTTGAAGGCTACTTTCGCCACAGATTTCATGTCAAGAAGAACAAGCTGATGACGCTG CATGGCTTTGATCTAGAGAAATACGAGCATCTCTGCACAGTCTTCAACCATAACAACTTCTCTTCACATTTTGTTAAAGGGTTGAAACAAGAAGATGAGT GGGGTCGCATTGCTTCGTAG
AA sequence Show only first row Show all	>Lus10016305 pacid=23145847 polypeptide=Lus10016305 locus=Lus10016305.g ID=Lus10016305.BGIv1.0 annot-version=v1.0 MALRKLFSKRLPAVGHLAPSPAVQYSVNPNSAKSNLHQELQEVATSRLNWKRFIHRTALRNHLPEFLSLPVGDKLREKLRLVNIADDRLQWTGLNPPPPA IGRRGVSVEETRKILRLAQMEKLKARLSLISTSSIPLSEFTQICVQECGNEDQGVEFAKKLDESGNVIVLGSIVFLRPEQVAKSIESIISRSIIAHTNDP RKRTLEEMHKEKSKIDEKAWAQVRAELYCGLGFLTAQTLGFMRLTFWELSWDVMEPICFFTTSLYFGMAYTFFLRTSIEPTFEGYFRHRFHVKKNKLMTL HGFDLEKYEHLCTVFNHNNFSSHFVKGLKQEDEWGRIAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	0	1
AT1G19715			Mannose-binding lectin superfa...		Lus10024290 [exp]	2.6	0.9448
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	2.8	0.9407
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018915 [exp]	4.9	0.9274
					Lus10024104 [exp]	5.9	0.9138
AT4G27290			S-locus lectin protein kinase ...		Lus10016862 [exp]	8.1	0.9277
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	8.7	0.8813
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10014821 [exp]	8.8	0.9106
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10010715 [exp]	10.3	0.8467
					Lus10042963 [exp]	12.7	0.8995
AT3G53720		ATCHX20	cation/H+ exchanger 20, cation...		Lus10025322 [exp]	13.0	0.8888

Compare expression of checked genes

Lus10016305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.