Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75080 330 / 8e-113 BZR BZR1 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) AT1G19350 325 / 3e-110 BZR BZR2, BES1 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein AT3G50750 191 / 4e-59 BZR BEH1 BES1/BZR1 homolog 1 (.1) AT1G78700 124 / 4e-33 BZR BEH4 BES1/BZR1 homolog 4 (.1) AT4G18890 117 / 1e-30 BZR BEH3 BES1/BZR1 homolog 3 (.1) AT5G45300 61 / 5e-10 BZR BAM8, BMY2 BETA-AMYLASE 8, beta-amylase 2 (.1.2) AT2G45880 56 / 1e-08 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7 (.1) AT4G36780 0 / 1 BZR BEH2 BES1/BZR1 homolog 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010795 [exp] 457 / 5e-163 AT1G75080 332 / 2e-113 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014327 [exp] 212 / 6e-67 AT1G75080 309 / 1e-104 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10026036 [exp] 211 / 3e-66 AT1G75080 303 / 2e-102 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10014326 [exp] 127 / 7e-35 AT1G75080 207 / 7e-66 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Lus10015238 [exp] 102 / 9e-25 AT1G78700 347 / 3e-119 BES1/BZR1 homolog 4 (.1) Lus10005419 [exp] 102 / 1e-24 AT1G78700 348 / 9e-120 BES1/BZR1 homolog 4 (.1) Lus10029270 [exp] 95 / 7e-22 AT1G78700 311 / 3e-105 BES1/BZR1 homolog 4 (.1) Lus10007319 [exp] 94 / 2e-21 AT1G78700 310 / 2e-104 BES1/BZR1 homolog 4 (.1) Lus10035679 [exp] 67 / 4e-12 AT5G45300 884 / 0.0 BETA-AMYLASE 8, beta-amylase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G041600 [exp] 352 / 8e-122 AT1G75080 349 / 2e-120 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.002G133700 [exp] 340 / 4e-117 AT1G75080 326 / 2e-111 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.005G126400 [exp] 243 / 7e-79 AT1G75080 269 / 1e-88 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.007G030700 [exp] 234 / 2e-75 AT1G75080 274 / 7e-91 BRASSINAZOLE-RESISTANT 1, Brassinosteroid signalling positive regulator (BZR1) family protein (.1), Brassinosteroid signalling positive regulator (BZR1) family protein (.2) Potri.004G062400 [exp] 122 / 6e-32 AT1G78700 337 / 1e-115 BES1/BZR1 homolog 4 (.1) Potri.011G071800 [exp] 120 / 3e-31 AT1G78700 334 / 2e-114 BES1/BZR1 homolog 4 (.1) Potri.003G026600 [exp] 118 / 1e-30 AT1G78700 341 / 4e-117 BES1/BZR1 homolog 4 (.1) Potri.011G106800 [exp] 118 / 1e-30 AT1G78700 362 / 1e-125 BES1/BZR1 homolog 4 (.1) Potri.001G386900 [exp] 117 / 3e-30 AT1G78700 340 / 7e-117 BES1/BZR1 homolog 4 (.1) Potri.016G125700 [exp] 77 / 8e-17 AT1G19350 82 / 1e-18 BRASSINAZOLE-RESISTANT 2, BRI1-EMS-SUPPRESSOR 1, Brassinosteroid signalling positive regulator (BZR1) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05687 [flax] [poplar] BES1_N BES1/BZR1 plant transcription factor, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10016307 pacid=23145864 polypeptide=Lus10016307 locus=Lus10016307.g ID=Lus10016307.BGIv1.0 annot-version=v1.0 ATGACGTCCGACGGGGCAACTTCGACGGCGGCAGCTCCGAGGAGGAAGCCGTCTTGGAGGGAGAGGGAGAACAACAGGAGGAGGGAGAGGCGTCGGAGAG CAACGGCGGCCAAGATATTCACCGGCCTCAGAGCTCAGGGGAACTACAATTTGCCCAAGCATTGCGACAACAACGAGGTCTTAAAAGCTCTGTGCCACGA AGCTGGGTGGGTCGTTGAAGAAGACGGCACTACTTATCGTAAGGGACACAGGCCTCCACCATTGGATATAGTGGGAGCTAGTTCAGCAAGAGTGACTCCA TACTCATCCCAAAATCAAAGTCCAATGTCTTCCTTATTCCCAAGCCCCATTCCTTCATACCAAGTCAGCCCTTCCTCTTCTTCTTTCCCAAGTCCATCTC GTGTTGAAAACAACAACAACCCACCTTCAGCCATCTTCCCTTTCTTCAGAAATTCAATTCCTTCATCCCTCCCACCTCTCAGAATCTCCAACAGTGCTCC TGTTACCCCTCCAATGTCATCTCCGAATTCCCGAAACCACAAGCCAATTCTTCCCAACTGGGACTCCATTGCTAGGCAATCTATGGCCTCCTTGAACAAC AACTACCCTCTCTATGCTGCATCTGCTCCTTCTAGCCCGACTCACCGACAGTTTCATGCTCCTGCAACTATACCCGAGTGTGATGAGTCGGATACATCGT CAACTGTGGAATCCGGTCAGTGGATCAGCTTCCAGAAGTTTGCACCTGCTGCTGCTATGGCTGCTGCAATGCCACCAGCATCACCTACATATAACCTGGT GAAACCTGTCCCTCAGCAGGGTCTTCTTTCCCATGACACAATCATGGGGGAGAGCGGGAGATCTATGGAGTTCGAATTTGGTAATGGTCGGGTCAAGGCA TGGGAAGGTGAGAGGATTCATGAGGTTGGGGTAGATGATCTTGAGCTCACACTTGGAAATGGGAAAGGGAGGAGTTAA
AA sequence Show only first row Show all	>Lus10016307 pacid=23145864 polypeptide=Lus10016307 locus=Lus10016307.g ID=Lus10016307.BGIv1.0 annot-version=v1.0 MTSDGATSTAAAPRRKPSWRERENNRRRERRRRATAAKIFTGLRAQGNYNLPKHCDNNEVLKALCHEAGWVVEEDGTTYRKGHRPPPLDIVGASSARVTP YSSQNQSPMSSLFPSPIPSYQVSPSSSSFPSPSRVENNNNPPSAIFPFFRNSIPSSLPPLRISNSAPVTPPMSSPNSRNHKPILPNWDSIARQSMASLNN NYPLYAASAPSSPTHRQFHAPATIPECDESDTSSTVESGQWISFQKFAPAAAMAAAMPPASPTYNLVKPVPQQGLLSHDTIMGESGRSMEFEFGNGRVKA WEGERIHEVGVDDLELTLGNGKGRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10016307 [exp]	0	1
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10010795 [exp]	1.0	0.8293
AT5G11000			Plant protein of unknown funct...		Lus10041022 [exp]	2.8	0.8024
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10026007 [exp]	4.5	0.7523
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	5.2	0.7840
AT3G07510			unknown protein		Lus10025856 [exp]	9.5	0.7503
AT1G51660		ATMKK4, ATMEK4	ARABIDOPSIS THALIANA MITOGEN-A...		Lus10037339 [exp]	16.4	0.7604
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	22.7	0.7251
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	23.4	0.7191
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	25.4	0.7186
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	28.3	0.7392

Compare expression of checked genes

Lus10016307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.