Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75130 572 / 0 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT2G26710 423 / 1e-143 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14610 379 / 9e-127 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT3G14680 379 / 2e-126 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14690 368 / 2e-122 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14630 368 / 2e-122 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT3G14660 365 / 2e-121 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14640 362 / 4e-120 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT2G46960 362 / 5e-120 CYP709B1 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) AT3G14620 353 / 2e-116 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010821 [exp] 661 / 0 AT1G75130 522 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10010802 [exp] 642 / 0 AT1G75130 432 / 6e-150 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 431 / 3e-146 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 365 / 4e-121 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025756 [exp] 365 / 9e-121 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10026085 [exp] 359 / 9e-119 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10004633 [exp] 356 / 2e-117 AT2G26710 378 / 4e-126 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10042487 [exp] 356 / 3e-117 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10036820 [exp] 353 / 2e-116 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G035200 [exp] 691 / 0 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G134500 [exp] 654 / 0 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G180500 [exp] 649 / 0 AT1G75130 494 / 6e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043000 [exp] 626 / 0 AT1G75130 495 / 2e-172 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.014G043100 [exp] 595 / 0 AT1G75130 516 / 2e-180 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.002G263800 [exp] 591 / 0 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 444 / 1e-151 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.006G154500 [exp] 431 / 1e-146 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G117600 [exp] 374 / 8e-125 AT3G14620 479 / 7e-166 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) Potri.011G098800 [exp] 371 / 2e-123 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10016310 pacid=23145875 polypeptide=Lus10016310 locus=Lus10016310.g ID=Lus10016310.BGIv1.0 annot-version=v1.0 ATGAATCTCCCCCTTGTGCTTTTCCCACCTCTCATCGTTTTAATCTACTTCCTAAAATTTCTCTACTCCGTAATCTGGCTTCCCTTCTCGATCCAACGCC ACTTCAACAATCAGGGAATCACCGGCCCCTCCTACCGTCTGATCACCGGAAACTCCGCCCAGATCCGCCATCTGTTCGCCCGAGCAGCTCAGTCGAAGCC CAGCGGCGGTGGATGTTTCCACCACCGGGATGTGGTGGCGAGGGTGGCCCCATTTTACCACGAGTGGTCCCGCACGTACGGTAAGACTTTTCTGTATTGG TTTGGGCCGAAACCCAGATTGGCCATATCTAACCCTGAAGTAGTCAAGGAAGTGTTGTTGAACAAGACCGGGTGTTTTGAGAAAGTCCGGTTCAACCCGC TCTCCAAGTTGCTGTTCGGAGATGGGCTTGTTGGGCTGGAAGGTGATAAATGGGCCCTTCATCGACGGATCACCAGTCAAGCTTTCAACATGGAGAGAAT TAAGGAATGGGTGCCGGAGATGGTGGCCAGCGCCGGGAAGATGTTGGAGAAGTGGGAGGAAATAAGAGGAGGCAAGGAAGAGCTGGAGATTGACGTTCAT AAAGAGGCACACAATTTATCTGCCGATATCATTTCTAGAACTGCTTTCGGTAGCAGCTTCGAAGAAGGAAAGCGTATATTCACACTCCAAGATCAGCAAC TGCACTTGGTTTCTTTGGCTCTTAGAACCATATACATTCCAGGTTTCAGGTTCTTGCCGACGAAGAAGAACAAAGAGAGGTGGAGATTGGAAAGGGAAAC CAGAGAATCCATTAGAGTGTTGATTCAGAGCAACAACAGGGGATCGGAAAATTCCAGAAATCTACTTACGCTGCTGACATCTCCGTACAAGAATGAGGAA GGGAAAGAGGAGAAATTGAATGTGGAGGAGGTTATAGACGAGTGCAAGACGTTTTACTTTGCAGGAAAAGAGACTACGGCTAATCTCATTACTTTTGCAC TACTACTCTTAGCAAATCATCAAGAATGGCAACTCAAGGCGCGTGAAGAAGTATTTCGTGTCTTTGGAGATCGCAAATCTCCTGTTGCTGAAATCCTAGG CGACCTTAAGACTCTGAATTTGATACTCAACGAAACTCTAAGGATGTATCCTCCAGCGGTGTTACTAATGAGGGAAACAAGCAAAAAGGTTAAGCTAGGG AGCTTGGAAGTTCCGTCTGGAACGCAATTCTATGTATCTTCGCTAGCAATTCACTACGACTCGGAAATATGGGGAGAAGACGCTCATGAGTTCAATCCCT TGCGATTCAATGAGCCCAGAAAGCATTTGGCTTCCTTCTTCCCATTTGGGATTGGTCCTAGAATCTGCGTGGGTCAGAATTTAGCATTAGTTGAAGCCAA AGTAGTTTTGGCTACAATCATCAGAAACTATTCGTTTTCCCTCTCGCCAACATATGTTCACGCTCCCTTGCTCATAATCAGCTTACAGCCTCAGTACGGT GCTCATATTTTGTTTAGAAAGCAAGCTCACTTGAAGGTCCTATAA
AA sequence Show only first row Show all	>Lus10016310 pacid=23145875 polypeptide=Lus10016310 locus=Lus10016310.g ID=Lus10016310.BGIv1.0 annot-version=v1.0 MNLPLVLFPPLIVLIYFLKFLYSVIWLPFSIQRHFNNQGITGPSYRLITGNSAQIRHLFARAAQSKPSGGGCFHHRDVVARVAPFYHEWSRTYGKTFLYW FGPKPRLAISNPEVVKEVLLNKTGCFEKVRFNPLSKLLFGDGLVGLEGDKWALHRRITSQAFNMERIKEWVPEMVASAGKMLEKWEEIRGGKEELEIDVH KEAHNLSADIISRTAFGSSFEEGKRIFTLQDQQLHLVSLALRTIYIPGFRFLPTKKNKERWRLERETRESIRVLIQSNNRGSENSRNLLTLLTSPYKNEE GKEEKLNVEEVIDECKTFYFAGKETTANLITFALLLLANHQEWQLKAREEVFRVFGDRKSPVAEILGDLKTLNLILNETLRMYPPAVLLMRETSKKVKLG SLEVPSGTQFYVSSLAIHYDSEIWGEDAHEFNPLRFNEPRKHLASFFPFGIGPRICVGQNLALVEAKVVLATIIRNYSFSLSPTYVHAPLLIISLQPQYG AHILFRKQAHLKVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10016310 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	1.0	0.9794
AT1G51340			MATE efflux family protein (.1...		Lus10026303 [exp]	1.7	0.9687
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	2.0	0.9738
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	2.2	0.9560
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10042487 [exp]	2.6	0.9478
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	2.8	0.9571
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	3.0	0.9442
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	3.9	0.9366
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10019989 [exp]	4.2	0.9553
AT5G61820			unknown protein		Lus10003210 [exp]	4.7	0.9285

Compare expression of checked genes

Lus10016310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.