Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75180 296 / 7e-100 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) AT1G19400 295 / 1e-99 Erythronate-4-phosphate dehydrogenase family protein (.1.2) AT1G01500 175 / 3e-52 Erythronate-4-phosphate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010803 [exp] 566 / 0 AT1G75180 357 / 1e-123 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Lus10026339 [exp] 188 / 1e-57 AT1G19400 234 / 6e-76 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10042323 [exp] 187 / 2e-57 AT1G19400 238 / 3e-77 Erythronate-4-phosphate dehydrogenase family protein (.1.2) Lus10007912 [exp] 163 / 9e-48 AT1G01500 350 / 1e-120 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10005124 [exp] 149 / 1e-42 AT1G01500 360 / 3e-125 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10036394 [exp] 140 / 1e-39 AT1G01500 295 / 4e-100 Erythronate-4-phosphate dehydrogenase family protein (.1) Lus10017328 [exp] 58 / 2e-09 AT4G24110 168 / 3e-51 unknown protein Lus10001676 [exp] 48 / 3e-06 AT4G24110 165 / 4e-50 unknown protein Lus10018819 [exp] 0 / 1 AT1G01500 303 / 3e-102 Erythronate-4-phosphate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G260900 [exp] 380 / 6e-133 AT1G75180 348 / 2e-120 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.009G115800 [exp] 281 / 4e-94 AT1G75180 310 / 2e-105 Erythronate-4-phosphate dehydrogenase family protein (.1.2.3) Potri.014G089600 [exp] 169 / 4e-50 AT1G01500 355 / 3e-123 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.002G163300 [exp] 167 / 2e-49 AT1G01500 354 / 1e-122 Erythronate-4-phosphate dehydrogenase family protein (.1) Potri.001G082500 [exp] 64 / 1e-11 AT4G24110 135 / 1e-38 unknown protein Potri.003G147800 [exp] 51 / 3e-07 AT4G24110 108 / 2e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016311 pacid=23145876 polypeptide=Lus10016311 locus=Lus10016311.g ID=Lus10016311.BGIv1.0 annot-version=v1.0 ATGGAAAGTCCATTTGAATCTTCTGATCATGATGAAGGGAGACTAGATGAAGGGAGGAAGTCTAGCCTTCAGATTATCAAGTACTCTCCATTTCAGCCAT ACTCCAGATTTTCATCACCATGGTTGGAGTTGAGAGTCTTCTATGTCAGGATCAGTAATTTCCAGGTTGATGATGATAAAGTTCCTGAGTCTCTCACAAT CAATCATATCCCTCTCAGCCCCGATACCGTCCTCGAAGTTAATGGCGTTAGGAGTAGTATGTACTCAGATGGCGGTGCCCCTTTGCTTCTTAGAAGGGAT CGAGTTGATAAGAAGTTTGAAGAAGTGACATTTGTTAGCACAGATAGTGTAAGAACAACTGGGAGTGTGAAGTTTGAAGTGTTTGACAAGGATGACTTCA TCCTATCTGGGACTATGGAGATGTTGAACGGTAATGGTGAATCAAAAGGCAATATGAAGCGATGGAATATGAAGTGTGAATCAGAAGTTACTTGTGGTAC TAGCTTTTTGAAAGGGAAACATGGTACGGGTCTTGAAGTGCCAGCCATTGAAGTTTATGTAACGGGATGCTTCTCTGGAACACCTGTCATACTAACCAAA TCTTTGCAACTTAGTTACCGGAAGAAGCATAATAGGAAATGTAAACTGGATTCAATTCCAGAGGACGAAACAACTGGCCACCCACGGAAACTTGAATCGC TTCAAGATGACTTACAGGTAGCAGAGTACCGAAGCTTCAAGCTTGAGAACGAAGAAGATTATGAGAATATGTACTGGAGAAGAAGCGAATTGATGGATGG TGAAGATGGTGAACTGTCTTGGTTCAATGCCGGAGTGAGAGTAGGCGTGGGGATCGGGCTGGGTATCTGCGTCGGGGTTGGTGTTGGTGTCGGTCTCTTG GTTCGAACATACCAAACAACCACCAGAAACTTCAGAAGGCGGCTAATCTGA
AA sequence Show only first row Show all	>Lus10016311 pacid=23145876 polypeptide=Lus10016311 locus=Lus10016311.g ID=Lus10016311.BGIv1.0 annot-version=v1.0 MESPFESSDHDEGRLDEGRKSSLQIIKYSPFQPYSRFSSPWLELRVFYVRISNFQVDDDKVPESLTINHIPLSPDTVLEVNGVRSSMYSDGGAPLLLRRD RVDKKFEEVTFVSTDSVRTTGSVKFEVFDKDDFILSGTMEMLNGNGESKGNMKRWNMKCESEVTCGTSFLKGKHGTGLEVPAIEVYVTGCFSGTPVILTK SLQLSYRKKHNRKCKLDSIPEDETTGHPRKLESLQDDLQVAEYRSFKLENEEDYENMYWRRSELMDGEDGELSWFNAGVRVGVGIGLGICVGVGVGVGLL VRTYQTTTRNFRRRLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10016311 [exp]	0	1
AT1G75180			Erythronate-4-phosphate dehydr...		Lus10010803 [exp]	1.0	0.8703
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	6.0	0.7348
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Lus10031826 [exp]	14.8	0.6276
AT2G46940			unknown protein		Lus10038023 [exp]	16.5	0.7107
AT3G52105			unknown protein		Lus10029521 [exp]	26.3	0.7167
AT2G31230	AP2_ERF	ATERF15	ethylene-responsive element bi...		Lus10022935 [exp]	36.3	0.6205
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10020254 [exp]	37.8	0.6469
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	39.5	0.5911
AT5G17260	NAC	ANAC086	NAC domain containing protein ...		Lus10010096 [exp]	44.5	0.6457
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Lus10026931 [exp]	49.4	0.6045

Compare expression of checked genes

Lus10016311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.