Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75170 389 / 3e-137 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G36640 367 / 1e-128 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G22180 266 / 2e-88 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G08690 253 / 1e-83 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G01630 91 / 2e-21 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G05370 80 / 1e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT5G63060 77 / 2e-16 Sec14p-like phosphatidylinositol transfer family protein (.1) AT3G22410 68 / 7e-13 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G14820 63 / 2e-11 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT1G55840 60 / 3e-10 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010804 [exp] 572 / 0 AT1G75170 393 / 7e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10025128 [exp] 436 / 2e-156 AT1G75170 380 / 3e-134 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10014312 [exp] 381 / 3e-134 AT1G75170 397 / 4e-140 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10026020 [exp] 383 / 6e-134 AT1G75170 397 / 4e-139 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10020911 [exp] 270 / 4e-89 AT4G08690 376 / 1e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10033464 [exp] 268 / 4e-89 AT4G08690 378 / 4e-132 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10023956 [exp] 199 / 9e-64 AT4G36640 166 / 1e-50 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10016733 [exp] 102 / 6e-26 AT1G01630 325 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10004684 [exp] 100 / 7e-25 AT1G01630 326 / 2e-113 Sec14p-like phosphatidylinositol transfer family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G261000 [exp] 423 / 6e-151 AT1G75170 427 / 3e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G123200 [exp] 409 / 4e-145 AT1G75170 414 / 9e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025800 [exp] 407 / 1e-144 AT1G75170 408 / 2e-144 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.007G025900 [exp] 390 / 8e-138 AT1G75170 369 / 3e-129 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.002G093400 [exp] 276 / 1e-91 AT4G08690 375 / 5e-130 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.013G068700 [exp] 263 / 8e-87 AT1G22180 351 / 6e-121 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Potri.005G168100 [exp] 107 / 5e-28 AT4G08690 134 / 4e-38 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.003G162100 [exp] 100 / 6e-25 AT1G01630 356 / 2e-125 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.017G063966 [exp] 99 / 3e-24 AT1G01630 340 / 2e-118 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.001G068000 [exp] 96 / 3e-23 AT1G01630 361 / 3e-127 Sec14p-like phosphatidylinositol transfer family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10016312 pacid=23145871 polypeptide=Lus10016312 locus=Lus10016312.g ID=Lus10016312.BGIv1.0 annot-version=v1.0 ATGTTTCGTCGCAAGACTAACACTCACCATGAACCTGAGGATGAGTCTCAGCAACGGGAAGCTAAGATCAACGAGCTTAAGGCTGCAATGGGTCCTCTGT CAGGAAGGAGCTTGATTTACTGCACAGACGCCTGCTTCAGAAGGTACCTTGTAGCAAGGAACTGGAATGTGGAGAAAGCCCAAAAGTTGTTGCAGGAAAC TCTTGAATGGAGGTCCACCTACAAGCCTGAGGAGACTCGTTGGCCTGAGGTTGCACACGAAAGTGAGACGGGCAAGCTATTCAGAGCTAATTTTCGTGAC AGACATGGGAGGACTGTTCTTATTCTCAGACCTGGACTGCAGAATACGAAATCAGCGGAGAATCAAATTCGACATTTGGTGTATCTCCTAGAGAATTCTG TACTTAACCTTCCAGAGGGACAAGAACAGATGTCCTTTTTAATTGATTTCACAGGGTGGTCTCTAACCAATAGAGTCCCCATCAAAACTGCTCATGAGAC AGCTTCCATTCTCCAATACCATTATCCTGAGAGGCTGGCCGCCGCCTTTCTCTACAATCCCCCTAGAATATTTGAAGCATTCTGGAAGGTTGTCAAGTAC TTCCTGGATCCCATCACAATCCAGAAGGTAAATTTCGTGTACCCGAAGAATCGAGGGAGCGTTGAGGTAATGAGATCGCACTTTGATGATCAGAACCTTC CAACTGAATTCGGAGGGGAAGCCAACTTGAAGTACGACCATGCAGAGTTCTCAAAGCTAATGCTTGAGGATGATCTCAAGACTGCTTCATTCTGGGGTTT CAACACAAAAGCCCAGGCACCTCGTGAATGA
AA sequence Show only first row Show all	>Lus10016312 pacid=23145871 polypeptide=Lus10016312 locus=Lus10016312.g ID=Lus10016312.BGIv1.0 annot-version=v1.0 MFRRKTNTHHEPEDESQQREAKINELKAAMGPLSGRSLIYCTDACFRRYLVARNWNVEKAQKLLQETLEWRSTYKPEETRWPEVAHESETGKLFRANFRD RHGRTVLILRPGLQNTKSAENQIRHLVYLLENSVLNLPEGQEQMSFLIDFTGWSLTNRVPIKTAHETASILQYHYPERLAAAFLYNPPRIFEAFWKVVKY FLDPITIQKVNFVYPKNRGSVEVMRSHFDDQNLPTEFGGEANLKYDHAEFSKLMLEDDLKTASFWGFNTKAQAPRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10016312 [exp]	0	1
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Lus10027321 [exp]	4.9	0.8610
AT4G39230			NmrA-like negative transcripti...		Lus10023557 [exp]	4.9	0.8696
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10000519 [exp]	7.7	0.8186
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10014917 [exp]	8.5	0.7883
AT4G15630			Uncharacterised protein family...		Lus10012809 [exp]	10.4	0.8500
AT1G03590			Protein phosphatase 2C family ...		Lus10031631 [exp]	17.9	0.8087
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	18.0	0.7992
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Lus10010660 [exp]	21.6	0.8058
AT1G78895			Reticulon family protein (.1)		Lus10034807 [exp]	22.5	0.8333
AT5G02580			Plant protein 1589 of unknown ...		Lus10025300 [exp]	24.2	0.8165

Compare expression of checked genes

Lus10016312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.