Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022491 [exp] 50 / 2e-06 AT4G36850 496 / 2e-174 PQ-loop repeat family protein / transmembrane family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G064450 [exp] 68 / 9e-14 ND / Potri.019G047975 [exp] 61 / 5e-10 AT1G43760 157 / 3e-42 DNAse I-like superfamily protein (.1) Potri.002G000350 [exp] 58 / 4e-09 AT1G43760 74 / 8e-14 DNAse I-like superfamily protein (.1) Potri.004G128901 [exp] 57 / 4e-09 AT1G43760 149 / 3e-39 DNAse I-like superfamily protein (.1) Potri.004G128941 [exp] 57 / 4e-09 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128961 [exp] 57 / 4e-09 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128860 [exp] 57 / 4e-09 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128880 [exp] 57 / 4e-09 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.004G128921 [exp] 57 / 4e-09 AT1G43760 148 / 5e-39 DNAse I-like superfamily protein (.1) Potri.003G046951 [exp] 56 / 4e-09 AT1G40390 48 / 9e-07 DNAse I-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016313 pacid=23145852 polypeptide=Lus10016313 locus=Lus10016313.g ID=Lus10016313.BGIv1.0 annot-version=v1.0 ATGGAAGAGAGAGGGATTATTCTTTTGGATTCAAGGTCCCTTCCTAGCGTGAAATCAGTGGTGATGGAGGAACGAGAGCTCCCAGAGCGTGGATCGACAA AAAACGAGCCTACGCCTAAGCCATCGGTGGAATTACCTAAGGAAACATCTATTGTTAGCGGTATGGAGCCGGGAGTGCTGTCAAATCTGCAGCTGGTGGT TCTCGTTTCCCCAGAAAGGAATGTGGTAATTGCCAAACTCCCTAGTTCGAGTAATTCTAGGCCACAACCCAACAAGCCAACGAGGAAAGGTAGCAGGAGT GTCCCTAGTAAACTTGCTAACAGTAAGCTGAATAGTATAGCTAAAACCACACCAAACTCGAAGGGGAAGGGAGGTGGGCATGAGAAACCTTATGGTAGTC CCGGAACAGGCAGCTACACATGCGTAGTAGAAGCCCGCCGTGTAGTCGCCAGCTCTAGGGCGCGACATGGTCTCCCTTTCATCGTTGCTTTTATCATGAA TATCCTTTTCTGGAATGTTTGGGGTGTCGGGAGTAAGATGTTTGATCACGCCTTTAGAAACGTGATCAGAAGTCAAGACATTAGTCTTGCCATTCTAATG GAAACCAAAGTTCAACCGGAACGAGCAAATGAGATTGTTAACGGCTTGCCTTTTTCGAAATCTTTTGTGGTCGATTCAGTTGGTCGAGCGGGAGGAATAT GGATTTTGTGGACTGATACTAATTTTACGGCGACGCTTCTCACCCATAATGTACAGACTGTCCATCTCCTTATCTCTTGCCCTGACAAGGGTGATTGGAT TCTAACGGCTTGTTATGCTAGCCCTTATAGGGCGTCGAGTGATGTTCTTTGGAAACAAATTACTCAATTCTCGCAGTCCAACAATCTCCCTTGGATGCTT ATAGGAGACTTGAACAAGATTGTGAATTCTTTGGAAAGACGGGGTGGTGTCTGTAGTTGGAACCCCACCTCACGCAGATTGGTCGGTTGA
AA sequence Show only first row Show all	>Lus10016313 pacid=23145852 polypeptide=Lus10016313 locus=Lus10016313.g ID=Lus10016313.BGIv1.0 annot-version=v1.0 MEERGIILLDSRSLPSVKSVVMEERELPERGSTKNEPTPKPSVELPKETSIVSGMEPGVLSNLQLVVLVSPERNVVIAKLPSSSNSRPQPNKPTRKGSRS VPSKLANSKLNSIAKTTPNSKGKGGGHEKPYGSPGTGSYTCVVEARRVVASSRARHGLPFIVAFIMNILFWNVWGVGSKMFDHAFRNVIRSQDISLAILM ETKVQPERANEIVNGLPFSKSFVVDSVGRAGGIWILWTDTNFTATLLTHNVQTVHLLISCPDKGDWILTACYASPYRASSDVLWKQITQFSQSNNLPWML IGDLNKIVNSLERRGGVCSWNPTSRRLVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016313 [exp]	0	1
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10002763 [exp]	9.4	0.7513
AT3G19700		IKU2	HAIKU2, Leucine-rich repeat pr...		Lus10012461 [exp]	13.5	0.7128
					Lus10007551 [exp]	15.2	0.6826
AT2G30830			2-oxoglutarate (2OG) and Fe(II...		Lus10023600 [exp]	17.9	0.6842
AT4G10940			RING/U-box protein (.1)		Lus10001535 [exp]	23.8	0.6911
AT3G24060			Plant self-incompatibility pro...		Lus10011754 [exp]	25.5	0.6857
AT3G54340	MADS	AP3, ATAP3	APETALA 3, K-box region and MA...		Lus10031960 [exp]	51.5	0.6655
AT5G48385			FRIGIDA-like protein (.1)		Lus10009979 [exp]	85.3	0.5900
AT1G60990			Glycine cleavage T-protein fam...		Lus10020818 [exp]	85.4	0.6293
AT2G46520			cellular apoptosis susceptibil...		Lus10030434 [exp]	92.6	0.5975

Compare expression of checked genes

Lus10016313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.