Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42710 164 / 2e-41 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010806 [exp] 1095 / 0 AT5G42710 179 / 3e-47 unknown protein Lus10010807 [exp] 554 / 0 AT5G42710 165 / 5e-46 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G185300 [exp] 578 / 0 AT5G42710 195 / 2e-51 unknown protein Potri.002G261700 [exp] 568 / 0 AT5G42710 185 / 4e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10016315 pacid=23145854 polypeptide=Lus10016315 locus=Lus10016315.g ID=Lus10016315.BGIv1.0 annot-version=v1.0 ATGGCCAAGAGATCAGATTTTGCTCAGAAGCTGTTGGATGATCTCCGGCTCAGGAAGGAGCGGATGGCAATTTCAAATCATCAGAATTCCAGAGGTTCAA AACCACCTGCTTCAGATACAAATGCAAACGCAAGACAAACGAATAGAAGTTCCAGGAATATGCAAACTCAGGAGACACCAGGTTTCAGGGCTGCAAGCGG GCATAATAGACACAGTTCAAGTCATAGATCAATTTCAATGGAGGATGCTTCAAAGCAGCTTGTTCCAGTCAGAAGAGGTCAACAAAGCCATCAGCAAATT GGAGATCTCTCTATGGCACTGACTTTTGCTATTGAGAACGGAACAAAACTTGGGAGAATTGATGCACCGAGCAGCAAGTCCATGCTTAATTTCTTGCATC AAATCAGCAGAAGATCAGGGGACTGGGGTAACATGCAAAAACGAAGTAATGTTGATATTCATTTCTCTTCATCCAGTCATCTTCCAGCTCTTTCTCACCA GCATATCAGAGATATTTCCAAAGGGGCACAACGATTGAATCAAATCTTGAGAGCTTGCTCTAACGGTATCAACTTTGATACTTATTCAGTCGAGATAGGA AAGGAGTTGCTGAAAGGAGCAAAAGAATTGGAAGAGTCCTTGAGGATGCTTGTCAACCTGCAAGAATCCTCGGACTACATGGTCACCCCACAGAGTAAGA GCCGGATCAAGTTGCTCGACGACAACAATGAAGAAGAAGATGATGATGTTGATGACAATAAAGTCGTGAAACGTTCAGTTCAGATGAAGCAGGTTGGTCT GCCGAGGTTTTCATTTGATAAGCCATCAAGAACTTCTAGTTATGCCAAGGATGCTGCAAGGACTGACGTCAAGCCAAGACTATTAGCACTGCCTTACCAT TCTGAACTTCCTGAAAACTTTTCAGGTGTAAGCAGCTCCAATTTTGCTACTCACAAGCGATCATCAAGCCATGGATCCAACTTGAAAAATCCAGTAGTCT CTGAACAGAGGATTCAGCCAAGTCCATCAAAACCAAAGCCAGAGAAGAAAAGAATCTCCAACGTAGTTGCTAAATTAATGGGACTGGAAGAATTTCCGGC AAATGAAGATGTGGCGGATGTTTCTGTAGGGAAGGAGACCAGTTCCAGGAAGAAAATTCCAGGATTTGTTCTAAGCTCTCTGGAGAAGGGAAATGTCAAT AGGAGGAACACAAAAGACGTGGAGAATTTGGTGCCTCCTCTAGGAAGAAAACAGAAGCAAGTGACGCAGGAGAAAACATACGCATTGGATTCCGAATGGA ATTTGACACTCCCCCACGACGGAGGAAAAATCTACAAGGATGTGGAAGGGTTAAATCCAATGAGAGGGTCGAACATGGCAAACATGAATATCGACAAGCA GCAAAGCAACAACGTATTAAGTCAAATAAGCAGATCTGAAAAGGACATTCAGAAGAAAGAATGGAATCAGAAAACTATAGAGGTCAAACGGGCACAGAAT GTTCATGAATCTTTAGAGATTAACCCGCTACATGACCAGTACGAGACAGTGAAAGGATCAGAAGCTGCAACTACTTGGTCTACTCAAACAGAATTAAGGC CAGAGAAGAGAGATACGAATAAGCAGATCTCAAGCAATCGAGTGAAGGGTCCCAACAAGATGTCATTTCAAGGAAAATCTCCCGGCAGCAATGGGTTTCA GCACCAGAAGCTGCCTGTTTTGGCCCAGAATTTTGATCCAAAAGACACGAAGCAACAAAGGAATCATATTAAAAGGAAAGAACTAGATCAAATAAACCAA GTAGATCCTTCTAGAAAAATCCCTATAGAACCTGGTGATGTAAGAATTACCAAAAGGGTTGGCCATAGTACATCCGGTGAATATCTTGAACAAAACAGAA GTCGAACTAATGCCATAGCCCATAAGCAGGATCCACGAAGCAGGAACTCGGATGAGAAGTCAGCTTCAAGAGATCTGAAACCTGACGACACCATGAAGAA GAAGAAAAACATCCTTTCGTCGGCATGTGACAAGGAAGAGAAACCGGCTCGTCCACAGACAATAGAGAAGGGAGAAACTATACCCATAAGAGTACAGAAG ATTGCCACTGCTCGGAGGATCGATGAACTATCAGAAAAGAGGAGAGGAACTTCACCAAACTTATCGAAGCTTAAACAGCAAGCTTCTTCCACATTGTCGC AAAAGAAGCAAAGAGGAGTCGATAAAAGACTAGGTGCGTCTAAGGAAACACACAAGGACAAATCAAGAAAATTCAATCAAACAAAAGTTCCACTTGTTAA ATCCAAGATGTCTACGGCAAGCATACAGCAAGTCGACATACCGGAAGAGCGACAAACCACGGCTGAAGAAGCTCCTAAATTGCAGGTACAGGATCATCTG AGTGACGATTATGAAAGCCTGCAGAGCCAACAAGTCCAACCTTCCGCTGAAAGTGCAATCGTTATAGAGACAGATGATCAAGACGACCACCAACTCAATA GTGGCGGTAATGATGAACATGGGTCTCGCACCATTATCACCGATCCAACCACAGGAGAAGATAGAACGGAAATCTACAATTCCCATCAACAACTGGAGGA GAAGGAAGAGCTAAAAGTAAGCCAACAGAAGAAACTACCGGAGCCACTAACAGAAGCTGAGAATCACCTCAAGCAGATTCTGGTAAAGAACCAACGATTC CTGGACACAGCAGAGGCACTCTTCAGGCTCAACATACCTATAGACATCCTCAACGTCAGCGACTCCCCCGATCCTCACAATGAAGAAGAGAGCAAGCTGA TGATAGACTGCAGCTTCGAGGTAATGAAACGAAAAGGTAAAAGGCAAGAAATACTCAGAAGAAGAATTCACAATCCCTTCACGAAGCTGACTGCCAATTC TACTAAGCGCGAATCCCTCGACGGCCTGATTCGGCAACTGTACATGGACCTCGAGAGGCTGAGATTCTACGGAAGGAACGGGAACGCCGAGTCGGGGATC GAAGAATACCTGCCCATAATGCTGGAAAACGATGTGTTCGATAGCGAGCCGGACTTGAACTCGATGTGGGAGATCGGTTGGGAAAAGGTAGATTCGGCGT TTCCTCAGAAGGATGAAGTGATTAGGGAAGTAGAGAAGCAAGTCCTGAACGGACTTCTCGACGAGATCGCCGGCTACCTTCTGGTGGTCTTTTGA
AA sequence Show only first row Show all	>Lus10016315 pacid=23145854 polypeptide=Lus10016315 locus=Lus10016315.g ID=Lus10016315.BGIv1.0 annot-version=v1.0 MAKRSDFAQKLLDDLRLRKERMAISNHQNSRGSKPPASDTNANARQTNRSSRNMQTQETPGFRAASGHNRHSSSHRSISMEDASKQLVPVRRGQQSHQQI GDLSMALTFAIENGTKLGRIDAPSSKSMLNFLHQISRRSGDWGNMQKRSNVDIHFSSSSHLPALSHQHIRDISKGAQRLNQILRACSNGINFDTYSVEIG KELLKGAKELEESLRMLVNLQESSDYMVTPQSKSRIKLLDDNNEEEDDDVDDNKVVKRSVQMKQVGLPRFSFDKPSRTSSYAKDAARTDVKPRLLALPYH SELPENFSGVSSSNFATHKRSSSHGSNLKNPVVSEQRIQPSPSKPKPEKKRISNVVAKLMGLEEFPANEDVADVSVGKETSSRKKIPGFVLSSLEKGNVN RRNTKDVENLVPPLGRKQKQVTQEKTYALDSEWNLTLPHDGGKIYKDVEGLNPMRGSNMANMNIDKQQSNNVLSQISRSEKDIQKKEWNQKTIEVKRAQN VHESLEINPLHDQYETVKGSEAATTWSTQTELRPEKRDTNKQISSNRVKGPNKMSFQGKSPGSNGFQHQKLPVLAQNFDPKDTKQQRNHIKRKELDQINQ VDPSRKIPIEPGDVRITKRVGHSTSGEYLEQNRSRTNAIAHKQDPRSRNSDEKSASRDLKPDDTMKKKKNILSSACDKEEKPARPQTIEKGETIPIRVQK IATARRIDELSEKRRGTSPNLSKLKQQASSTLSQKKQRGVDKRLGASKETHKDKSRKFNQTKVPLVKSKMSTASIQQVDIPEERQTTAEEAPKLQVQDHL SDDYESLQSQQVQPSAESAIVIETDDQDDHQLNSGGNDEHGSRTIITDPTTGEDRTEIYNSHQQLEEKEELKVSQQKKLPEPLTEAENHLKQILVKNQRF LDTAEALFRLNIPIDILNVSDSPDPHNEEESKLMIDCSFEVMKRKGKRQEILRRRIHNPFTKLTANSTKRESLDGLIRQLYMDLERLRFYGRNGNAESGI EEYLPIMLENDVFDSEPDLNSMWEIGWEKVDSAFPQKDEVIREVEKQVLNGLLDEIAGYLLVVF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42710			unknown protein		Lus10016315 [exp]	0	1
AT2G23360			Plant protein of unknown funct...		Lus10004994 [exp]	1.0	0.9825
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	2.4	0.9721
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	3.0	0.9491
AT5G50130			NAD(P)-binding Rossmann-fold s...		Lus10042088 [exp]	4.0	0.9420
AT4G14760			kinase interacting (KIP1-like)...		Lus10041192 [exp]	4.1	0.9413
AT5G42710			unknown protein		Lus10010807 [exp]	5.0	0.9612
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10007296 [exp]	5.2	0.9689
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	5.7	0.9652
AT5G42710			unknown protein		Lus10010806 [exp]	6.9	0.9465
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	6.9	0.9536

Compare expression of checked genes

Lus10016315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.