Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17130 120 / 2e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G47960 45 / 5e-06 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002739 [exp] 241 / 6e-82 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037791 [exp] 167 / 6e-53 AT3G17130 131 / 8e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10017074 [exp] 154 / 2e-47 AT3G17130 121 / 8e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10002933 [exp] 56 / 6e-10 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10003530 [exp] 55 / 2e-09 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 52 / 3e-08 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 46 / 3e-06 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 45 / 7e-06 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 43 / 4e-05 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102600 [exp] 139 / 5e-42 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.009G083500 [exp] 63 / 2e-12 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G063000 [exp] 61 / 1e-11 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10016319 pacid=23161793 polypeptide=Lus10016319 locus=Lus10016319.g ID=Lus10016319.BGIv1.0 annot-version=v1.0 ATGACAATAATCTCCTCAGTTTCTCTTCTCCTAATCCTAATCCTAATCCTCATCCCATCCGCCGTCAAATCCGACGACCTAATCGAACAAGTCTGCAAAA AAACCCCCTTCTACGGCCTCTGCGCCGCCACTCTCCACTCCAACTCCTCGTCCTCTGCATCCTCCGACATCAAGGGCCTCGCCTCGTCAGCAACCAACCT CGTACTCTCCAACGCCACGGAGACGCTGGCTTACATCCAGCAGCAGTTAAAGCAAACCAGGGATCCCAAGCTGGAGAAAGCTCTGGCGAATTGCGCGGAG CTCTACATTCCGGTGGTGAAGTACAATCTCCCCCAGGCAATGGACGCTTTCCTCAGGGGGTATTACGGGTTTACCAAGTACGCGCTCTCCGACGCGAGTA AGCAGGCTGATGCTTGCCAGAAGAGCTTGTCCGGCGCCGGCGCGGGGTCCGGCGCCGGGGCTTCCGGCGCGGGAGGGGAGTTGGGGGCGAGGAATAAGTT GTTGAGTGATTTGTGTGATGTAGGGGCCGCCATTGTTGGGTTGCTAATGAAAGTTGGGGGTTTAAAGGTTTGA
AA sequence Show only first row Show all	>Lus10016319 pacid=23161793 polypeptide=Lus10016319 locus=Lus10016319.g ID=Lus10016319.BGIv1.0 annot-version=v1.0 MTIISSVSLLLILILILIPSAVKSDDLIEQVCKKTPFYGLCAATLHSNSSSSASSDIKGLASSATNLVLSNATETLAYIQQQLKQTRDPKLEKALANCAE LYIPVVKYNLPQAMDAFLRGYYGFTKYALSDASKQADACQKSLSGAGAGSGAGASGAGGELGARNKLLSDLCDVGAAIVGLLMKVGGLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17130			Plant invertase/pectin methyle...		Lus10016319 [exp]	0	1
AT3G17130			Plant invertase/pectin methyle...		Lus10002739 [exp]	1.0	0.9612
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10035859 [exp]	2.6	0.8574
AT4G05400			copper ion binding (.1.2)		Lus10008331 [exp]	5.7	0.8887
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007620 [exp]	9.3	0.8769
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10007579 [exp]	11.3	0.8719
AT3G55605			Mitochondrial glycoprotein fam...		Lus10001015 [exp]	13.4	0.8220
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	19.4	0.8129
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10034633 [exp]	20.2	0.8258
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	20.6	0.8585
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009677 [exp]	20.8	0.8485

Compare expression of checked genes

Lus10016319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.