Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 496 / 8e-176 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT3G10700 49 / 3e-06 GalAK galacturonic acid kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037789 [exp] 582 / 0 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 573 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 544 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 473 / 1e-166 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 57 / 8e-09 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10025946 [exp] 52 / 3e-07 AT3G10700 532 / 0.0 galacturonic acid kinase (.1) Lus10014251 [exp] 50 / 1e-06 AT3G10700 510 / 9e-180 galacturonic acid kinase (.1) Lus10020178 [exp] 48 / 8e-06 AT4G16130 625 / 0.0 arabinose kinase (.1) Lus10016321 [exp] 0 / 1 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148100 [exp] 552 / 0 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 548 / 0 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 59 / 2e-09 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.006G070500 [exp] 53 / 9e-08 AT3G10700 555 / 0.0 galacturonic acid kinase (.1) Potri.018G003100 [exp] 52 / 4e-07 AT4G16130 1660 / 0.0 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal
Representative CDS sequence Show only first row Show all	>Lus10016320 pacid=23161862 polypeptide=Lus10016320 locus=Lus10016320.g ID=Lus10016320.BGIv1.0 annot-version=v1.0 ATGGCTGCTTTCGGTGTCAGCATCCCAAAGAAAGAACTTGCTCAGCTTACATGTGATTGTGAGAGGCACATAGGAACACAATCAGGAGGAATGGATCAGG CAATTTCAGTTATGGCAAAGGCTGGATTCGCAGAACTTATTGATTTTAACCCTGTTCGAGCAACTGATGTGCATCTTCCAGATGGAGGGACTTTCGTGAT TGCGCATTCATTAGCAGAATCTCAAAAGGCAGTCACTGCTGCCACTAACTACAATAACAGAGTTGTTGAATGCCGCTTAGCTTCTATCATACTTGGAATT AAACTAGGAATGAAACCAGATGAAGCAAGAGCAAAAGTCAAAACCTTGTCTGATGTTGAAGGGTTGTGCATATCTTTTGCTGCCAAACATAATTCTTCTG ATCCTGTTATTGCTGTTAAGGAATATTTGAAGGAGGAGCCATACACCGCTGAAGAGATGGAGGAAATAATTGGAGAAAAGCTGACATCTACCTTTGCCAG TTCTGTCTCTTCATTGGAAGTACTAAAGGCAGCCAAGCACTTCAAATTACATCAGAGAGCTGCTCATGTTTACTCAGAAGCCAAGCGTGTTCATGCTTTC AAGGATACCGTGTTAGCTAAACTCAATGATGATGAGAAGCTGAAGAAGCTGGGTGAGCTAATGAATGACAGCCACCACAGTTGCAGTGTTCTTTACGAAT GCAGCTGCCAAGAGTTGGAGGAACTTGTAAAGATCTGCCGCGAGAATGGAGCATTAGGGGCTAGGCTAACTGGAGCTGGGTGGGGAGGTTGTGCAGTTGC GTTAGTGAAGGAAGCAATTGTCCCACAGTTCATCATAAATTTAAAGGAGAAGTTCTACCAGTCGAGGATCGAGAAAGGCGTAATCAACAAGAACGAACTT GGACTCTACGTGTTTGCTTCGAAGCCTTCGAGTGGAGCTGCCATTTTCAAATTCTAG
AA sequence Show only first row Show all	>Lus10016320 pacid=23161862 polypeptide=Lus10016320 locus=Lus10016320.g ID=Lus10016320.BGIv1.0 annot-version=v1.0 MAAFGVSIPKKELAQLTCDCERHIGTQSGGMDQAISVMAKAGFAELIDFNPVRATDVHLPDGGTFVIAHSLAESQKAVTAATNYNNRVVECRLASIILGI KLGMKPDEARAKVKTLSDVEGLCISFAAKHNSSDPVIAVKEYLKEEPYTAEEMEEIIGEKLTSTFASSVSSLEVLKAAKHFKLHQRAAHVYSEAKRVHAF KDTVLAKLNDDEKLKKLGELMNDSHHSCSVLYECSCQELEELVKICRENGALGARLTGAGWGGCAVALVKEAIVPQFIINLKEKFYQSRIEKGVINKNEL GLYVFASKPSSGAAIFKF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016320 [exp]	0	1
AT5G60580			RING/U-box superfamily protein...		Lus10022585 [exp]	6.5	0.8573
AT1G69340			appr-1-p processing enzyme fam...		Lus10036809 [exp]	6.9	0.8544
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	10.2	0.8541
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	11.6	0.7671
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10002740 [exp]	12.1	0.8630
AT5G59050			unknown protein		Lus10001433 [exp]	12.4	0.8189
AT5G06130			chaperone protein dnaJ-related...		Lus10014223 [exp]	14.8	0.8342
AT1G01770			unknown protein		Lus10014782 [exp]	17.7	0.8027
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	17.9	0.8186
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	20.0	0.8484

Compare expression of checked genes

Lus10016320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.