Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 311 / 2e-104 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT4G16130 59 / 9e-10 ATISA1, ARA1 arabinose kinase (.1) AT3G42850 52 / 1e-07 Mevalonate/galactokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002740 [exp] 397 / 3e-138 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10017072 [exp] 365 / 3e-125 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10037789 [exp] 360 / 1e-123 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 282 / 1e-92 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 48 / 5e-06 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10020178 [exp] 45 / 3e-05 AT4G16130 625 / 0.0 arabinose kinase (.1) Lus10016320 [exp] 0 / 1 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148100 [exp] 338 / 9e-115 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 330 / 7e-112 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 66 / 3e-12 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 50 / 7e-07 AT4G16130 1660 / 0.0 arabinose kinase (.1) Potri.018G138204 [exp] 42 / 0.0003 AT4G16130 1003 / 0.0 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF10509 [flax] [poplar] GalKase_gal_bdg Galactokinase galactose-binding signature CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016321 pacid=23161897 polypeptide=Lus10016321 locus=Lus10016321.g ID=Lus10016321.BGIv1.0 annot-version=v1.0 ATGGCGGCGAACCACGACGAGCTCCCAGTTCCACTCTTCTCCTCCCTCGATCCTGTATACGGCGGCGGTTCTCAACTTGAGGAAGCACAGCACCGTTATG AGAAGTTGAGGTCCAAGTTTGTACAAGTCTTCGGCCATGCTCCGGACTTCTACGCTCGGTCTCCAGGAAGAGTGAATTTGATTGGGGAGCACATTGATTA TGAAGGGTACTCGGTTCTGCCAATGGCGATTAGGCAGGATACGATCGTGGCGATTCGTAAGCGATCTCCTTCGGAAGCGGAGAAGATTCTACGGATTGCT AATGTCAACGATAAGTACACAACTTGCACTTACCCTGCGGATCCTAGCCAGAAAATTGACTTGAAGAATCACAAATGGGGTCATTATTTCATCTGCGGGT ATAAAGGTTATTACGAATACGCCAAAGAAAAAGGGATGGAAGTTGGAGTCCCAGTTGGGCTAGATGTTATGATTGATGGAACTGTTCCTACTGGTTCTGG ACTTTCGAGTTCTGCTGCATTTGTTTGTTCATCCACCATAGGGATTATGGCTGCTTTCGGTGTAAGCATCCCAAAGAAAGAACTTGCTCAGCTTACATGT GATTGTGAGAGGCACATAGGAACACAATCAGGAGGAATGGATCAGTTATGGCAAAGGCTGGATTCGCAGAACTTATTGATTTTAACCCTGTTCGAGCAAC TGATGTGCATCTTCCAGATGGAGGGACTTTCGTGA
AA sequence Show only first row Show all	>Lus10016321 pacid=23161897 polypeptide=Lus10016321 locus=Lus10016321.g ID=Lus10016321.BGIv1.0 annot-version=v1.0 MAANHDELPVPLFSSLDPVYGGGSQLEEAQHRYEKLRSKFVQVFGHAPDFYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKRSPSEAEKILRIA NVNDKYTTCTYPADPSQKIDLKNHKWGHYFICGYKGYYEYAKEKGMEVGVPVGLDVMIDGTVPTGSGLSSSAAFVCSSTIGIMAAFGVSIPKKELAQLTC DCERHIGTQSGGMDQLWQRLDSQNLLILTLFEQLMCIFQMEGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10016321 [exp]	0	1
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10011968 [exp]	5.9	0.8227
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	8.4	0.7942
AT5G56610			Phosphotyrosine protein phosph...		Lus10012928 [exp]	16.5	0.7706
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	19.4	0.7723
AT1G27350			Ribosome associated membrane p...		Lus10011355 [exp]	19.7	0.7438
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10035285 [exp]	20.5	0.7750
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	21.4	0.7587
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	25.8	0.7801
					Lus10024528 [exp]	31.6	0.6992
AT1G70870			Polyketide cyclase/dehydrase a...		Lus10039893 [exp]	33.7	0.7222

Compare expression of checked genes

Lus10016321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.