Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 217 / 1e-59 disease resistance family protein / LRR family protein (.1) AT3G23110 160 / 2e-40 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT3G05650 160 / 2e-40 AtRLP32 receptor like protein 32 (.1) AT2G15080 152 / 4e-38 AtRLP19 receptor like protein 19 (.1.2) AT5G46330 149 / 1e-36 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 148 / 1e-36 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 148 / 1e-36 Leucine-rich receptor-like protein kinase family protein (.1) AT1G35710 147 / 3e-36 Protein kinase family protein with leucine-rich repeat domain (.1) AT1G71390 146 / 3e-36 AtRLP11 receptor like protein 11 (.1) AT1G71400 145 / 8e-36 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002742 [exp] 1149 / 0 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10039512 [exp] 597 / 0 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10039531 [exp] 462 / 9e-150 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 460 / 9e-149 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 453 / 3e-146 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 453 / 3e-146 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 453 / 4e-146 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 453 / 4e-146 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 448 / 3e-144 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 317 / 6e-95 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.003G196832 [exp] 301 / 5e-94 AT2G34930 203 / 8e-57 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 292 / 3e-85 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 276 / 3e-80 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 274 / 2e-79 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 271 / 4e-78 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 251 / 5e-71 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 243 / 2e-68 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 236 / 8e-66 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 235 / 9e-66 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016324 pacid=23161917 polypeptide=Lus10016324 locus=Lus10016324.g ID=Lus10016324.BGIv1.0 annot-version=v1.0 ATGACTCTTACATCTGCTACTGCTATTCTGTGTTTCTGGTTGTTCATCTCAGCAATCAGAACCTTCACATTCGGCCATGGAGCCCTTGGCAACAACCAGA GTTGCCAGGCTGGCGAAAGGCAGGCTCTTTTGGAGTTCAAAAGAAGTTTGGTGGACCCTTCTAACTGGCTCAAGTCCTGGTCAGGCCGCCATGGAGATTG CTGCAAATGGTATGGAGTTGTCTGCAGCAACGGCACAGGTCATGTCATCGAGCTCCATCTCGGGGCAGCAGATTTCACATCCTTCAGTGCAGAAATCAAC CCTTCTCTGGCGAAATTAAACCAGCTGAGATACTTGGACCTCAGTAGGAATAACTTTTCGGGATTCCCCGTACCCGAATTCATCGGCTCCCTCTTGAACT TGATCCGGCTCGACCTTTCCATAGCAGGATTCTCAGGAGCCATCCCTTATAAACAGCTTGGAAGCCTCACCAAGCTGAGCTACCTTAACTTGCAAGGTAA CTACGAAGGGGAGTTGTACCTCGAAAATCTCGATTGGGTTTCGAGTCTCCTTTCCTTAAAGTTCTTGTCTTTGAGCTATGTGGATCTTAGCCGCGTTAAG AATAATTGGCTCACAGTGTTGAACAAAGTTCCTTCCTTGGAAGAACTTTACCTGTCAAATTGTCAACTTGGTTTCATTCCCAATTCTCTCCCTCAAGTCA ACCTTTCATCACTTTCTCTACTTGATCTCTCTTACAACAACTTCAGTGATCCTTTGTTCCCCACTTGGACCTTCTATCTCCATTCTTTAACCTCCCTCGA TCTCGCCAATAACAAATTCCGCGGCCCGATTCCTGAGGGTCTCCGTAACATGTCTTTGTTAAGTCAACTTGACTTGTCTTGGAACCACTTCACTTCCTTG GAGCCAAACTGCTTTTTGGGGCTAACCCACATGGAAGTACTCAGCATGACTCAGAACGACTTGAAAGGCGAAATATTTTCGAGCGCGATGCAGAACATGA CTTCTCTGATAGACCTGGATTTGTCCTTTAATGAGCTTGAGTCTGCTGTTGGAATTCCAGAATACTTCAGCAACTTTTGCAGCTTGAGGGTAATTACTCT GTCAGGAGTCCGATTAAGGCAAGAGGTCGGTGAAGTGCTACGCGTTCTGTCAGAATGTCCTGCGATTACTTTGGAGACAATTCAAATGTCGAATTGTCAA CTGTTTGGGAACCTGATGAACATTCCTTTCCGGAACTTTCAGAAGCTGGACACTCTTTCCTTGTCAAGGAACTTAATTTCAGGTCGAGTTCCATTGTCAG TAACAGATATAGTATCGCTACGGAGCCTGGAGCTTTTCAGCAACAAATTGGTTGGACCTCTTCTTTCAAGTCTCGGAAGCCTCCCTAATTTGGAATCCAT CGACATCTCCGAAAACTCACTGGAGGGTGAAGTTACAGAATCTCATTTCCAGAACTTCACAAGACTATGGCTTTTTCAAGCATCTGGAAACCAACTTAGC TTGAAAGTTGGCCCGAGGTGGAACCCTCCACCACAAATAGAGATTCTTGGGATGGGATTCTGGCATTTAGGACCCCAGTTTCCTTTCTGGATTCGGTCGT TGAAGCTTTTGACACAGCTGAATATGTCGAGCTCTGGAATTTCAAGCTCGATTCCTCCTTGGTTGTTCTTCAACTCTCATTTCTACAGCATTGATATGAG TTCAAATCTGTTGAATGGTTCGCTGCCGTACATCTACCCGTTCATGAGCGTGCTGGACCTTTCGAACAATTCTCTTTCAGGGTCTCTATCGAATTTCCTG TGTTACAAACCGGAAGAAGAGAAAACAATGCAAGTTATGAACCTCGGAGCAAACGAATTCAGCGGAGAGATTCCTGATTGCTGGACGAGTTGGAAGTATC TGGAGGCCATAAAGTTGAGCAGCAACAAGTTCAGAGGCAGCATTCCTCGATCCCTCGGAACATTGTCTTTCCTCCAGTCTCTTCATCTGAGAAGCAACAA TCTATCTGGTGAAATACCACAATCATTCGCAAACGTCACCAAGTTGGTCGCTCTTGACTTCAGCAAGAACAAACTGGAAGGAATCCTTCCAGCTTGGATA GGAACAAGGCGTTTCGGAGAACTTAATTTCAGGTCGAGTTCCATTGTCAGTAACAGATATAGTATCGCTACGGAGCCTGGAGCTTTTCAGCAACAAATTG GTTGGACCTCTTCTTTCAAGTCTCGGAAGCCTCCCTAA
AA sequence Show only first row Show all	>Lus10016324 pacid=23161917 polypeptide=Lus10016324 locus=Lus10016324.g ID=Lus10016324.BGIv1.0 annot-version=v1.0 MTLTSATAILCFWLFISAIRTFTFGHGALGNNQSCQAGERQALLEFKRSLVDPSNWLKSWSGRHGDCCKWYGVVCSNGTGHVIELHLGAADFTSFSAEIN PSLAKLNQLRYLDLSRNNFSGFPVPEFIGSLLNLIRLDLSIAGFSGAIPYKQLGSLTKLSYLNLQGNYEGELYLENLDWVSSLLSLKFLSLSYVDLSRVK NNWLTVLNKVPSLEELYLSNCQLGFIPNSLPQVNLSSLSLLDLSYNNFSDPLFPTWTFYLHSLTSLDLANNKFRGPIPEGLRNMSLLSQLDLSWNHFTSL EPNCFLGLTHMEVLSMTQNDLKGEIFSSAMQNMTSLIDLDLSFNELESAVGIPEYFSNFCSLRVITLSGVRLRQEVGEVLRVLSECPAITLETIQMSNCQ LFGNLMNIPFRNFQKLDTLSLSRNLISGRVPLSVTDIVSLRSLELFSNKLVGPLLSSLGSLPNLESIDISENSLEGEVTESHFQNFTRLWLFQASGNQLS LKVGPRWNPPPQIEILGMGFWHLGPQFPFWIRSLKLLTQLNMSSSGISSSIPPWLFFNSHFYSIDMSSNLLNGSLPYIYPFMSVLDLSNNSLSGSLSNFL CYKPEEEKTMQVMNLGANEFSGEIPDCWTSWKYLEAIKLSSNKFRGSIPRSLGTLSFLQSLHLRSNNLSGEIPQSFANVTKLVALDFSKNKLEGILPAWI GTRRFGELNFRSSSIVSNRYSIATEPGAFQQQIGWTSSFKSRKPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10016324 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10016325 [exp]	1.0	0.9329
AT4G30040			Eukaryotic aspartyl protease f...		Lus10004064 [exp]	14.9	0.8182
					Lus10028146 [exp]	18.5	0.7768
AT5G35160			Endomembrane protein 70 protei...		Lus10005060 [exp]	20.5	0.8351
AT5G12870	MYB	ATMYB46	myb domain protein 46 (.1)		Lus10002559 [exp]	20.7	0.8519
					Lus10031697 [exp]	22.1	0.7904
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10010917 [exp]	22.6	0.8194
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10016253 [exp]	23.6	0.6992
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10000228 [exp]	23.9	0.7884
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	25.5	0.8258

Compare expression of checked genes

Lus10016324 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.