Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 200 / 3e-57 disease resistance family protein / LRR family protein (.1) AT1G74170 180 / 4e-50 AtRLP13 receptor like protein 13 (.1) AT3G05370 174 / 4e-48 AtRLP31 receptor like protein 31 (.1) AT3G05660 172 / 2e-47 AtRLP33 receptor like protein 33 (.1) AT5G25910 172 / 3e-47 AtRLP52 receptor like protein 52 (.1) AT3G11010 172 / 3e-47 AtRLP34 receptor like protein 34 (.1) AT2G33060 171 / 4e-47 AtRLP27 receptor like protein 27 (.1) AT1G58190 171 / 5e-47 AtRLP9 receptor like protein 9 (.1.2) AT4G04220 170 / 9e-47 AtRLP46 receptor like protein 46 (.1) AT2G33050 168 / 4e-46 AtRLP26 receptor like protein 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002742 [exp] 677 / 0 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10039512 [exp] 449 / 1e-150 AT2G15080 379 / 2e-116 receptor like protein 19 (.1.2) Lus10002753 [exp] 310 / 1e-97 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 310 / 6e-97 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 308 / 3e-96 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 307 / 7e-96 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 305 / 4e-95 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10039529 [exp] 302 / 4e-94 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 300 / 3e-93 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196766 [exp] 384 / 2e-130 AT2G34930 257 / 7e-76 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 287 / 3e-89 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 277 / 3e-84 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 265 / 3e-80 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 264 / 5e-80 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 261 / 4e-79 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 262 / 8e-79 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 260 / 1e-78 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 259 / 1e-78 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 258 / 8e-78 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10016325 pacid=23161818 polypeptide=Lus10016325 locus=Lus10016325.g ID=Lus10016325.BGIv1.0 annot-version=v1.0 ATGCAGGTGATGAACCTTGGAGCAAATGAATTCAGCGGAGAGATTCCTGATTGCTGGACGAGTTGGAAGTATCTGGAGGCCATAAAGTTGAGCAGCAACA AGTTCAGAGGCAGCATTCCTCGATCCCTCGGAACATTGTCTTTCCTCCAGTCTCTTCATCTGAGAAGCAACAATCTATCTGGTGAAATACCACAATCATT CGCAAACGTCACCAAGTTGGTCGCTCTTGACTTCAGCAAGAACAAACTGGAAGGAATCCTTCCAGCTTGGATAGGAACAAGGCTTTCCGGAATGATGATT CTCAATCTCAGAGAAAACAAGTTCCACGGCAGCATACCGAACGAGCTTTGCCTGGCGAAATCACTGCGCATTCTCGATCTTGCTGACAACAATATAACTG GTTATATTCCCAGATGTGTTAACAACTTCACTGCAATGGTTAAGATGGATGACACCCTCGGTGTCATCCAGCTCAGCTACAACGGTACGGGACCGTTCTT CGAGACAGCATTGGTTATGATCAAAGGAAAGCTAAACGAATATGGATCCATCCTGAAGTTTGTGAGGAGCATAGACCTGTCAAAGAACAAACTAGTCGGA GAGATACCTGACGAGATGACTAAACTCGGAGGCTTACAGTCGCTAAACCTGTCCGATAATTTCTTGACCGGAGTCATCCCTCGAGATATAGGATCCATGG GAGCACTAGAATCTATCGACCTCTCTCTCAACCAACTCACTGGCGAAATCCCTCCGAGCTTTTCAAGCATGACGTTCCTCAGCTTTATGAACATTTCTTC CAACAGATTGACTGGAAGGATTCCTTTGAGTACTCAACTTCAGAGCCTCAACTCATCTAGTTTTGCAGGAAACAGTTATCTCTGCGGTTTACTGCCGAAG TGCAGAACGGATAACACAACAGTTGACAGCAACGGAAATCAGAAGCCTGAAGATGATGGAAATGATGATCCGGAGATAAAATGGTTTTACGTGAGCTTGG CGCTTGGATTCATACTCGGTTTCTGGGGTGTGGTGGCTTCGATGGTACTCAATAACCAGTGGAGGATTGGCTACTTCCATTTCGTGGACCGTTTGTGGGA CAGACTATGCTGCCGCCTCTGA
AA sequence Show only first row Show all	>Lus10016325 pacid=23161818 polypeptide=Lus10016325 locus=Lus10016325.g ID=Lus10016325.BGIv1.0 annot-version=v1.0 MQVMNLGANEFSGEIPDCWTSWKYLEAIKLSSNKFRGSIPRSLGTLSFLQSLHLRSNNLSGEIPQSFANVTKLVALDFSKNKLEGILPAWIGTRLSGMMI LNLRENKFHGSIPNELCLAKSLRILDLADNNITGYIPRCVNNFTAMVKMDDTLGVIQLSYNGTGPFFETALVMIKGKLNEYGSILKFVRSIDLSKNKLVG EIPDEMTKLGGLQSLNLSDNFLTGVIPRDIGSMGALESIDLSLNQLTGEIPPSFSSMTFLSFMNISSNRLTGRIPLSTQLQSLNSSSFAGNSYLCGLLPK CRTDNTTVDSNGNQKPEDDGNDDPEIKWFYVSLALGFILGFWGVVASMVLNNQWRIGYFHFVDRLWDRLCCRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016325 [exp]	0	1
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10016324 [exp]	1.0	0.9329
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10010917 [exp]	3.5	0.8583
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10016323 [exp]	8.5	0.8340
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Lus10030973 [exp]	9.5	0.7950
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	10.7	0.8410
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	11.9	0.8581
AT3G05370		AtRLP31	receptor like protein 31 (.1)		Lus10000228 [exp]	16.5	0.8042
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003940 [exp]	22.3	0.8049
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	23.3	0.8510
AT5G52180			unknown protein		Lus10015101 [exp]	24.6	0.8250

Compare expression of checked genes

Lus10016325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.