Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 410 / 9e-128 disease resistance family protein / LRR family protein (.1) AT4G13920 263 / 4e-74 AtRLP50 receptor like protein 50 (.1) AT4G20140 250 / 1e-68 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 241 / 2e-65 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 240 / 3e-65 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71400 236 / 5e-65 AtRLP12 receptor like protein 12 (.1) AT2G15080 237 / 7e-65 AtRLP19 receptor like protein 19 (.1.2) AT5G27060 232 / 3e-63 AtRLP53 receptor like protein 53 (.1) AT3G05660 229 / 1e-62 AtRLP33 receptor like protein 33 (.1) AT2G33170 230 / 3e-62 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002743 [exp] 1620 / 0 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 952 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10039514 [exp] 948 / 0 AT2G34930 447 / 6e-142 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 937 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 931 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 931 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 928 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 910 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 906 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106900 [exp] 518 / 5e-168 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 514 / 2e-166 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 495 / 6e-159 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 474 / 1e-151 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 473 / 2e-151 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 471 / 2e-150 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 474 / 4e-150 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 466 / 9e-147 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 459 / 9e-146 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 453 / 2e-142 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016326 pacid=23161919 polypeptide=Lus10016326 locus=Lus10016326.g ID=Lus10016326.BGIv1.0 annot-version=v1.0 ATGACTTCTCTTACATTTTTTGTTTGCCTGAGCTGGATGATCTGCTGTACTTGTGCTGAAGGCTGCATTCAATCTGAAGGAGAAGCTCTTCTGGAATTCA AGGCTGGTCTTGAAGACCCTGCAAGCTTCTTATCATCTTGGATTCCCCAAGGGGATTGCTGCACATGGTTCGGTGTCGTATGTGACGGTGAAAACTCTAC CACTGGCCACGTCACTGAGCTTCATCTCGGGCAGTCTTCTTCCTCCTTTCGGAAGAACTCTGTGTTTAGCGGTAAGCTAAATCCTTCACTGCTTGAGTTG AAACATCTGAGTTATTTGGACCTTTCATACAACAACTTTGAAGGGATTCCAGTTCCTAGTTTCCTCTGCTCCGTCACTAGTTTAAACTATCTGTACCTTG ACGGAGCTGGATTCGGAGGAGTTATTCCTCATCAACTGGGGAACCTCTCGAATTTGCAGCAGCTTGGTTTGCAGGCTGGACATTATTATGCGCTATATGC TGATAGTTTGCAGTGGATTTCCGGTTTGCATTCGCTAGAATATCTTGATTTGAGTTCTGTTGATCTTAGCAATGCATCCGACTGGCTGAACGTGATAAAC ACCCTCCCATCTCTATCGAAATTGTATCTTTCGAGATGTCGAATCCGTCACATCCCTCTGATCGCAAACCTAAACCTCTCATCGTTGTCAGCTCTAGATT TATACCACAATGATTTCTCCCAAACTTCAGTTCCTAGTTGGGTTTCTTCTCTTCACAGCCTTACTTATTTAGATCTAGGATTCAACAATTTCGGAGGTTC GTTTCCTGATGAGCTCCGAAACCTTACTTCACTCAAGACCCTTTCCTTGTATGCGAATCATTTCAATTCTTCAATACCAAACTGGCTATACAGTTTACAT AATCTGGAGATTCTCGACTTGTATACAAACAAGTTGAGCGGTGGTATCTCGAAAGAGATCGGCAACTTGTCCTCTATTGTCCGCCTGGAGTTGTCATTGA ATGATGGCCTTGAATTCGAGGAGGGGACTCCGGAGTTGTTCGAAGGCTTTTGCAGTTTGAGCTCGCTTTCTCTGTCTCGTGTGAAACTGAATCGAAGTGT GTCACAGTTACTTGATACCCTTGGAAAATGTGCTTATAATACGTTGCAGGTGTTGAATTTACGCGGTTGCCAACTGTTCGGTCCTTTGACTAACAAGATC GGGAATTTTAAGACACTAAGGCGTCTCGTTCTTGCTAATAATTCAATATCTGGTCCACTTCCCGTGTTATTTGGTGGGATGACATCGTTGATTCATGTTG ATATCGCGAGGAACAAGATTAACGGGACGATTCCGGAGAGTTTTGGGATGTTGGAAGAGTTGAGGTATGCTGATATATCTCAGAACTCAATGCAAGGTGT TGTTTTTCCTCAAATTCTGTTTGCCAAGCTATCGAATTTGTCTAGCCTTTATGCGTTTGATAACCAGTTGGTTCTGAAAGCTAAACCGGAATGGCGTCCC TCCAAGCAACTTGTAACATTGGACTTAGGATCCTGGTATGTTGGACCTGGATTTCCTCATTGGCTGCAAAATTTAGAGCATCTGAACTCTCTTGATCTGT TCAACTCTGGAATTTCCGAACCTTTTCCTGAATGGTTCTGGAACATGTCGTCTCAGTTCTACTATCTGAATTTCTCTCACAACCAAATCCCTGGAAGGCT TCCACATGTCATCTCTGTTGTTAGTAGTTTGTCATTGTTTGATTTCAGTTTCAATTGCTTGGAAGGTCCGCTGCCTACGATCTCGTCGAATTTGACCTTT TTGGACCTTTCCAACAATTTACTCTCCGGGAACTTGCTCAAGTTCCTGTGTTTCAACCCAAGTCGGATGAAGGATATGGAATATCTCAGCCTGCAGAGTA ATCGTTTGACCGGTGCGATACCGAATTGTTGGAAGCACTGGCAGAACTTGAAAGCCATAAGGCTGGGGAACAACAAGTTTAGCGGCGAAATTCCGGATTC TATAGGGTATCTAAGCTCGCTTAGAGCTCTGCGTCTTCAGAATCTCAGCCTAACCGGTGAGATTCCTGCTTCCCTTGGGAATTGTTCTAGGTTAGTCTCT GTCGGATTGGGTCAGAATCAATTGGAAGGGAACATTCCGAAATGGATTGGGCGAAGCCTTCCGGATTTATCCATCCTTAGTCTGGGGTGGAATAAGTTCC ATGGCAGCATACCTGGGGAGATCTGTAACCTGCAATCTCTGCAAATTTTGGATCTTTCTCACAACTACATTAATGGTACCGTGCCAGAATGTGTGGCGAA TCTCAGTGCAATGGTTAGAGCAGCCAATGATACTTCAGGCATCATTCAGGTCTTTGCTGGGATGAGCTATTCGTTTCCGGACACTCAAATGGTGGTGGCC AAAGGGCAGCTGTTGGATTACAGCACCATACTGAACTACGTCAGAAGTTTCGACCTTTCCAGTAATAACTTGTCAGGAGAGATCCCAAAGCAGATCACAA GCTTGAAGGCGCTGAAATATCTGAACTTATCACACAATTCGTTCTCAGGTGCAATTCCTGAAGATCTAACTGAAATGCAGTCTCTGGAATCCATGGATTT ATCTAATAATCAACTCTCTGGAGCAATCCCTTCAAGTCTAGGAGGTCTGACATTCTTGAGTCATTTGAACTTGTCCTGCAACAACTTGGGTGGTAAAATC CCTTCAAGCACTCAACTGCAGAGCTTTGATTCATCCAGCTTCACCGGCAACCGAGAACTTTGTGGTCCCCCGTTGCGCGTGAACTGCAGCATTCGAAGCA GCTTAGTACCCGGTTTTGTAGATGATGAAGAATTTTCACTGCATTGGTTATCTCATAGCGTCGTTCTCGGTTTTGTTGCCGGTTTCTGGGCTGTGGTTGC TACTTTTGCTTTGAATCAAGAGTCTAGCAAAATTTACTTTGAGTTTGTTGATCTTATAGGCAAAAAGTTGTGGATTTTGTTAATTCGATCGCTGAAGTAG
AA sequence Show only first row Show all	>Lus10016326 pacid=23161919 polypeptide=Lus10016326 locus=Lus10016326.g ID=Lus10016326.BGIv1.0 annot-version=v1.0 MTSLTFFVCLSWMICCTCAEGCIQSEGEALLEFKAGLEDPASFLSSWIPQGDCCTWFGVVCDGENSTTGHVTELHLGQSSSSFRKNSVFSGKLNPSLLEL KHLSYLDLSYNNFEGIPVPSFLCSVTSLNYLYLDGAGFGGVIPHQLGNLSNLQQLGLQAGHYYALYADSLQWISGLHSLEYLDLSSVDLSNASDWLNVIN TLPSLSKLYLSRCRIRHIPLIANLNLSSLSALDLYHNDFSQTSVPSWVSSLHSLTYLDLGFNNFGGSFPDELRNLTSLKTLSLYANHFNSSIPNWLYSLH NLEILDLYTNKLSGGISKEIGNLSSIVRLELSLNDGLEFEEGTPELFEGFCSLSSLSLSRVKLNRSVSQLLDTLGKCAYNTLQVLNLRGCQLFGPLTNKI GNFKTLRRLVLANNSISGPLPVLFGGMTSLIHVDIARNKINGTIPESFGMLEELRYADISQNSMQGVVFPQILFAKLSNLSSLYAFDNQLVLKAKPEWRP SKQLVTLDLGSWYVGPGFPHWLQNLEHLNSLDLFNSGISEPFPEWFWNMSSQFYYLNFSHNQIPGRLPHVISVVSSLSLFDFSFNCLEGPLPTISSNLTF LDLSNNLLSGNLLKFLCFNPSRMKDMEYLSLQSNRLTGAIPNCWKHWQNLKAIRLGNNKFSGEIPDSIGYLSSLRALRLQNLSLTGEIPASLGNCSRLVS VGLGQNQLEGNIPKWIGRSLPDLSILSLGWNKFHGSIPGEICNLQSLQILDLSHNYINGTVPECVANLSAMVRAANDTSGIIQVFAGMSYSFPDTQMVVA KGQLLDYSTILNYVRSFDLSSNNLSGEIPKQITSLKALKYLNLSHNSFSGAIPEDLTEMQSLESMDLSNNQLSGAIPSSLGGLTFLSHLNLSCNNLGGKI PSSTQLQSFDSSSFTGNRELCGPPLRVNCSIRSSLVPGFVDDEEFSLHWLSHSVVLGFVAGFWAVVATFALNQESSKIYFEFVDLIGKKLWILLIRSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016326 [exp]	0	1
AT1G42480			unknown protein		Lus10013214 [exp]	19.0	0.4674
AT5G49610			F-box family protein (.1)		Lus10037619 [exp]	24.7	0.5132
AT5G05480			Peptide-N4-(N-acetyl-beta-gluc...		Lus10007519 [exp]	29.6	0.4249
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10036211 [exp]	51.5	0.5142
					Lus10022865 [exp]	56.0	0.5054
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	76.8	0.4616

Compare expression of checked genes

Lus10016326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.