Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06690 510 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 200 / 8e-61 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 94 / 2e-21 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G10810 91 / 2e-20 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60730 88 / 5e-19 NAD(P)-linked oxidoreductase superfamily protein (.1), NAD(P)-linked oxidoreductase superfamily protein (.2), NAD(P)-linked oxidoreductase superfamily protein (.3) AT2G27680 87 / 6e-19 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 87 / 8e-19 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 84 / 8e-18 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 79 / 3e-16 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 72 / 1e-13 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002744 [exp] 667 / 0 AT1G06690 496 / 9e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10029615 [exp] 110 / 2e-27 AT1G60710 399 / 2e-139 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10023701 [exp] 94 / 4e-21 AT1G60690 527 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 88 / 3e-19 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 88 / 4e-19 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041185 [exp] 87 / 7e-19 AT1G60750 384 / 2e-133 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 88 / 8e-19 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10020578 [exp] 87 / 1e-18 AT2G27680 595 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041184 [exp] 85 / 4e-18 AT1G60690 374 / 1e-129 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G207000 [exp] 539 / 0 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 536 / 0 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 491 / 5e-175 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 219 / 5e-68 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234000 [exp] 97 / 2e-22 AT1G60690 524 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040000 [exp] 96 / 8e-22 AT1G60710 376 / 2e-130 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 92 / 8e-21 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 92 / 2e-20 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.013G040100 [exp] 90 / 7e-20 AT1G60710 369 / 1e-127 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 87 / 8e-19 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10016327 pacid=23161806 polypeptide=Lus10016327 locus=Lus10016327.g ID=Lus10016327.BGIv1.0 annot-version=v1.0 ATGGCGACTACTATGGCTACGCAAGTCGGTACAGCCTCCTTCTCTCCTGGTTTTGCTCGGGGACAGCAACGGAGGAGCTCCTCCTGCCGGATTGTGGTTC CCAGAGCTGCTGCTGCTGCTTCCGGCGACGTGTCGACTGTAGAAGATGACAAAGTGAAGTTAGGAGGATCCGATTTGAAGGTCACAAAGCTCGGAATTGG AGCTTGGTCTTGGGGCGACACCAGCTACTGGAACAATTTTCAATGGGACGATAGAAAACTCAAAGATGCTAGGGATGCTTTCAATGCAAGTATTGATTCT GGGATTACTCTCATTGATACAGCTGAAGTTTATGGCTCCAGGGCATCATTTGGTGCCATCAGTTCTGAAACCCTACTTGGAAGATTCATCAGCGAGAGAA AGAAATCAGAACCTGACTTGGAGGTGGCTATTGCCACCAAGTTCGCTGCATTGCCATGGAGGCTGGGACGTGAGAGTGTCCTAACCACTCTTAAGGATTC CCTAAGCCGCCTTGGAGTATCCTCAGTGGAACTGTATCAGCTTCATTGCAATTCGTCCTCTGTAGTGACTCATCAAGTTCTTGCGCTGCTGGTCTACAGG CCTGGAATATGGGGAAATGAAGGGTATATAGATGGTCTTGGAGATGCAGTTGAGCAGGGCCTAGTGAAGGCTGTTGGCGTTTCGAACTACAGCGAGAAAC GTCTCCGAGCTGCTTATGAGAAGCTCAAACAAAGAGGTATCCCATTAGCCTCAAACCAGGTAAATTACAGTCTTATATACAGAAAACCAGAGGAAAATGG AGTTAAGGCAGCTTGTGATGAACTTGGAGTCACTGTGATTGCATATAGTCCGATTGCTCAAGGTGCTCTTACTGGAAAGTATACCCCAGAGAACCCGCCT AGTGGACCTCGCGGCAGGATTTACACTCCTGAAGTTCTAACAAAGGTAGTTCTCAACTGGTTGATATCTCAAGACAATGTTATTCCAATCCCCGGAGCCA AATCTGCAGAACAGGCTAGCGAGTTTGCTGGTGCAATTGGTTGGAGACTTTCAACTGAAGAGATTGATGAGCTGCGGTCCATGGCATCGGAATTAACTCC AGTTGTCGGTTTTCCAGTTGAAAAGCTATAG
AA sequence Show only first row Show all	>Lus10016327 pacid=23161806 polypeptide=Lus10016327 locus=Lus10016327.g ID=Lus10016327.BGIv1.0 annot-version=v1.0 MATTMATQVGTASFSPGFARGQQRRSSSCRIVVPRAAAAASGDVSTVEDDKVKLGGSDLKVTKLGIGAWSWGDTSYWNNFQWDDRKLKDARDAFNASIDS GITLIDTAEVYGSRASFGAISSETLLGRFISERKKSEPDLEVAIATKFAALPWRLGRESVLTTLKDSLSRLGVSSVELYQLHCNSSSVVTHQVLALLVYR PGIWGNEGYIDGLGDAVEQGLVKAVGVSNYSEKRLRAAYEKLKQRGIPLASNQVNYSLIYRKPEENGVKAACDELGVTVIAYSPIAQGALTGKYTPENPP SGPRGRIYTPEVLTKVVLNWLISQDNVIPIPGAKSAEQASEFAGAIGWRLSTEEIDELRSMASELTPVVGFPVEKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10016327 [exp]	0	1
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Lus10031435 [exp]	1.7	0.9657
AT1G06690			NAD(P)-linked oxidoreductase s...		Lus10002744 [exp]	1.7	0.9611
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	3.5	0.9624
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10014975 [exp]	4.2	0.9474
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	5.3	0.9553
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	5.5	0.9450
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10042720 [exp]	6.3	0.9476
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10023149 [exp]	6.6	0.9449
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10039216 [exp]	6.9	0.9374
AT4G01935			unknown protein		Lus10010062 [exp]	9.2	0.9281

Compare expression of checked genes

Lus10016327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.