Plant FIBer expression Database

Lus10016328 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55850 692 / 0 LAF3 ISF2, LAF3 ISF1, LAF, LAF3ISF2, LAF3ISF1 LAF3 ISOFORM 2, LONG AFTER FAR-RED 3 ISOFORM 1, LONG AFTER FAR-RED 3, Amidohydrolase family (.1.2)
AT1G67550 49 / 9e-06 URE urease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002745
[exp]
931 / 0 AT3G55850 711 / 0.0 LAF3 ISOFORM 2, LONG AFTER FAR-RED 3 ISOFORM 1, LONG AFTER FAR-RED 3, Amidohydrolase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G196300
[exp]
810 / 0 AT3G55850 704 / 0.0 LAF3 ISOFORM 2, LONG AFTER FAR-RED 3 ISOFORM 1, LONG AFTER FAR-RED 3, Amidohydrolase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0034 Amidohydrolase PF07969 Amidohydro_3 Amidohydrolase family
Representative CDS sequence
>Lus10016328 pacid=23161864 polypeptide=Lus10016328 locus=Lus10016328.g ID=Lus10016328.BGIv1.0 annot-version=v1.0
ATGAATCTCATCCTGATTCTCTCGGCCGCCGTTGCTCTTTCCGTCGCCGTTCTGTACCTCCCACTCCTCAACTACCCGCGGTTGTTTAATTTCAGCCTCA
ACGGTCGGCTCTCGTCGTCCAACTCAGGAGCAGAACCCTTCGCAGAATTAGTGCTGAAAAATGGCGTCATTTTCACGAGTGATGCTTCAGCTCCTTTCGC
TGATTCCATGGCAGTGAGTAACGGAAGGATTCTCCGGATAGGCAACTATTCGTCACTCCAGGGTTTGATCGGAAATGAGACTGAGCTGCTGAATCTTGAA
GGGAAGGTTGTCGTTCCTGGGTTTATAGATTCTCATGTCCATTTCATTCCTGGTGGATTGCAGATGGCGCGAGTTAAGCTGCAGGGTGTACGTCAGAAGA
CAGAATTTGTAAGAAGAATCGAAGAGGCGGTAAAAAATGCAAAACAAGGTTCATGGGTTTTGGGTGGTGGATGGAACAATGATATGTGGGGTGGAGAATT
ACCGATGGCATCATGGCTCGATGATTTCAGCACAGACAATCCTGTGTGGTTAACGAGGATGGATGGTCATATGGGGTTGGCCAACTCACTTGCACTGAAG
CTGGCTGGCATCAAGCCTACAGGACTGTTAGTTGATGCTGCTATGAAACTCATCCTTGCTGTGATTCTGGAGGTTTCTGTGACTGAAAGGCGGGAAGCTT
TGCTCAGGGCTACAAATCTTGCCTTGAAGAGGGGTGTGACTAGTGTTGTTGACTTTGGAAGATACTTTCCCGGAGCATCACCAGAGGATCCGTGGGAGGA
CTTGTCAGGTGTATATCAATGGGCTGATTATTCAGGGCAGTTGAGGACCAGGATGTGCATGTTCTTCCCAATGGAGACATGGTCTCGTCTAGCTGACGTT
ATGAAGAAAACTGGCCGCGTTCTGAGTGATTGGATTTATTTGGGAGGTGTCAAAGCCTTTGCTGATGGGTCTTTAGGGTCCAATAGTGCACTGTTCTATG
AGCCGTATGTTGGAGAGCCTCAGAATACTGGCCTTCAATTGATAGATATGAAGAGTCTTTTCAACATGACTGCAGCTTCAGATAAATTTGGACTCCAGGT
TGCCATTCATGCTATCGGTGACAAAGCAAATGACATGGTCCTGGAGGTTTACAAATCTGTTGCTTCAACAAATGGAAATAGATATAGAAGATTCAGGATT
GAGCATGCCCAGCACTTGGCACCTGGAGCTACTAATCAATTTGGTGAACAGAAGATCTTTGCTTCAGTGCAGCCAGATCACCTACTCGATGATGCCGACA
CTGCATCGAAAAAGCTTGGGACAGAAAGAGCTCAGACAGGGTCTTACTTATTCCATTCCTTTCTGGATAGCAATGTACCGTTGGCATTGGGATCTGATTG
GCCTGTAGCAGACATGAATCCATTAGGGAGCATAAAAACAGCGATGAAAAGAATACCCCCTGGTTGGGAAACCGCTTGGAATGCGGCTGAGTGCCTTTCC
CTGACTGATGCATTGATTGCGCACACTATATCAGCAGCTGAAGCATGCTTTCTAGATGAGTATGTGGGGTCTTTATCCCCTGGGAAGTTGGCTGATTTCG
TGATACTTTCCGTCGAATCGTGGGAGAAGTTCGAGGAAGAAGGAGCTGCTTCGGTTCAGGCAACATACCTCGGCGGTGTAAAGGCATATCCATAG
AA sequence
>Lus10016328 pacid=23161864 polypeptide=Lus10016328 locus=Lus10016328.g ID=Lus10016328.BGIv1.0 annot-version=v1.0
MNLILILSAAVALSVAVLYLPLLNYPRLFNFSLNGRLSSSNSGAEPFAELVLKNGVIFTSDASAPFADSMAVSNGRILRIGNYSSLQGLIGNETELLNLE
GKVVVPGFIDSHVHFIPGGLQMARVKLQGVRQKTEFVRRIEEAVKNAKQGSWVLGGGWNNDMWGGELPMASWLDDFSTDNPVWLTRMDGHMGLANSLALK
LAGIKPTGLLVDAAMKLILAVILEVSVTERREALLRATNLALKRGVTSVVDFGRYFPGASPEDPWEDLSGVYQWADYSGQLRTRMCMFFPMETWSRLADV
MKKTGRVLSDWIYLGGVKAFADGSLGSNSALFYEPYVGEPQNTGLQLIDMKSLFNMTAASDKFGLQVAIHAIGDKANDMVLEVYKSVASTNGNRYRRFRI
EHAQHLAPGATNQFGEQKIFASVQPDHLLDDADTASKKLGTERAQTGSYLFHSFLDSNVPLALGSDWPVADMNPLGSIKTAMKRIPPGWETAWNAAECLS
LTDALIAHTISAAEACFLDEYVGSLSPGKLADFVILSVESWEKFEEEGAASVQATYLGGVKAYP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G55850 LAF3 ISF2, LAF3... LAF3 ISOFORM 2, LONG AFTER FAR... Lus10016328
[exp]
0 1
AT5G38600 Proline-rich spliceosome-assoc... Lus10034080
[exp]
2.4 0.8724
AT5G18750 DNAJ heat shock N-terminal dom... Lus10032539
[exp]
5.2 0.8684
AT3G25470 bacterial hemolysin-related (.... Lus10002144
[exp]
5.5 0.8829
AT2G45850 AT-hook AT hook motif DNA-binding fami... Lus10030381
[exp]
6.0 0.8653
AT3G17470 ATCRSH Ca2+-activated RelA/spot homol... Lus10042894
[exp]
13.9 0.8460
AT5G65820 Pentatricopeptide repeat (PPR)... Lus10011566
[exp]
19.0 0.8407
AT3G09250 Nuclear transport factor 2 (NT... Lus10022605
[exp]
20.6 0.8366
AT3G11470 4'-phosphopantetheinyl transfe... Lus10008521
[exp]
21.0 0.8392
AT3G18370 NTMCTYPE3, ATSY... C2 domain-containing protein (... Lus10009032
[exp]
24.0 0.8250
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10023640
[exp]
25.1 0.7771

Lus10016328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.