Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40030 1059 / 0 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 209 / 2e-54 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT1G45230 111 / 3e-27 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT3G46630 107 / 7e-26 Protein of unknown function (DUF3223) (.1) AT5G60040 57 / 8e-08 NRPC1 nuclear RNA polymerase C1 (.1.2) AT3G57660 48 / 7e-05 NRPA1 nuclear RNA polymerase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002748 [exp] 2502 / 0 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10024797 [exp] 107 / 5e-26 AT3G46630 201 / 9e-66 Protein of unknown function (DUF3223) (.1) Lus10018738 [exp] 105 / 2e-25 AT3G46630 201 / 1e-65 Protein of unknown function (DUF3223) (.1) Lus10006339 [exp] 113 / 7e-25 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10002955 [exp] 110 / 5e-24 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10009756 [exp] 101 / 9e-24 AT1G45230 193 / 3e-62 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10006488 [exp] 99 / 6e-23 AT1G45230 195 / 8e-63 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Lus10041856 [exp] 62 / 3e-09 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10015971 [exp] 52 / 5e-06 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196900 [exp] 1291 / 0 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 1078 / 0 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 198 / 5e-51 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.014G028300 [exp] 114 / 2e-28 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.002G125700 [exp] 113 / 6e-28 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023400 [exp] 102 / 3e-24 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G023200 [exp] 101 / 6e-24 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.005G107600 [exp] 62 / 4e-09 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04983 [flax] [poplar] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04998 [flax] [poplar] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10016332 pacid=23161873 polypeptide=Lus10016332 locus=Lus10016332.g ID=Lus10016332.BGIv1.0 annot-version=v1.0 ATGTTGAAGAGCTACTTCTACGATAGAGCTGCTGCTCAGCAGCTGGCAATGTTTTTGTCCTATTCGTTGTCGTCGCCCTCTTTGTTCAAGGCCAAGCAAC ATGGGCCGTATTGGACTGCTTTACAGATACTACAGTCATCACTGCCTGCTTCTTTTGAGTGTTCTGAGGATATGTATCTGATCAGTAAAAGTAACATACT AAAGGTGGATCATGATAGGGATGTTCTGCAGAATATCCTAAATGAAGTAGCCACTTCAATTTTCTTCCAAAAGGGTCCTGAAGCAGTCATTCTGTTCTTC AACTCAGTGCAGCCTTTACTGATGGAGAACTTGTATTCTAAAGGTTTTAGCATCAGTTTGGAAGATTTTTCACTGTCTGAGAATATTCGAAAAAACATAC AGAGACACTTTGAAGTTATGGCTAGAATAAGGTCAACAGCAACCTATAATGAAAGGGTTGAATTGCAGATTGAGAACTGTATCCAGAAGGTGAAGCAACC TGTGGTTGATTTCATTTTAGAGTCTTCTGCATTAGCTGATCTGATCCACTCCAAGAGTGATTCTGGGGTAAAGAAGGTGGTTGAGCAAATTGGCTTTCTG GGTCTACAAATTTCTGATCTTGGAAAATTATATTCTAAGGTTCTAGTTGAGGATGCTGCGTCTCTGTTTGTGAGCAAATACCCTTCTGATGTTGAATATC CCTCTGCACAATATGGGTTGGTGAAGGGTTGTTTTTTCCGTGGGTTAGATCCATACGAAGAGATGATTCATTCAATATCGAGTAGGGAGGTTATGATTCG TTCATCAAGGGGCTTGTCTGAACCTGGAACCTTGTTCAAGAACTTGATGGCGGTCCTGCGAGATGTGGTTATCTGCTATGATGACACTGTTAGGAATGTT TGCAGCAACTTGATCATCCAGTTTCAGTATGGGGAGGCTGCTGGAACAAAATTTCAGAGTTCATTGGCTGCTGGGGAACCGGTCGGTGTTCTAGCTGCAA CTGCAATGTCAAATCCTGCATACAAGGCAGTGCTTGATTCTAGTCCTAATAGCAATTCCTCCTGGGAGCTGATGAAGGAAATACTACTTTGCCGAGTTGG TTTCAAGAACAACCAAAATGACCGGCGTGTAATTTTATACCTTAATGAATGTGGATGTGGAAAGAAATACTGCCAAGAAAAAGCTGCATACTTGGTGAAG AATCATCTGGAAAAAGTCAGTTTGAAAGATACTGCGACGTCCTTCATGATTGAGTACACGAGGCAACCAAATGACTTCAGAATTGATTCAGGTCTTGTCG GTCATATACATCTTACAAAGAGGAAACTACAATCGTTGAAGATAGGAATGCATGATGTTCTTCAAAAGTGTCAGCATACTATCAACTTGTTGGGCAAGAG TAAAAAAGAGCTTGGCAAGCTTTACAAAATGACAACTCTCTCTGTTAGATTGAATTGGTACGTGGTGGAAACAAGTAGCTGCGATTATGAGATGCACATT CTTCTGACAAGTTTGCTTGTGCTTCTTAGCAGTGAGTGTTGCTCCTTTCCGCAGTCATGTAAGGATGAATCTTTGGAGACGCCCTGCTTGATGTTCTGCT TGGGAGAAACATATGACGGCAATTTGGAAAAGACAATGGAACTTCTAGCTGAAAGGATTTGCCCAGTTCTGATGGAAACAATTGTCAAAGGAGATGAACG GGTGTCTTCTGCAAACATTATCTGGGCCAGTCCAGATACCACTTCATGGATAAGGAACCCTTCAAGGACAAAGGAAAAAGAAGGAGAGGTTGCTCTGGAT ATTGTCCTGGAGAAGAAGGCAGTAAAACAAAGTGGTGATGCATGGAGGACTGTGCTGGATGCATGTCTTCCTGTCATTCATCTCATTGATACAACCCGTT CCGTCCCATATGCTATAAAGCAAGTTCAGGGTCTGTTGGGAATTTCTTGCGCTTTTGATCAAGCAGTTCAGCGCCTGTCAACATCAGTGACAATGGTAGC AAAAGGTTTGCTGAAAGAACATCTATTTCTGCTGGCTAACAGCATGACATGCTCTGGAAACTTAGTTGGCTTCAATCCTGCTGGAATTAAAGCACTGTCT CGCTCGTTGGATATCCAAGCGCCATTCACTGAGGCAACTCTTTATACGCCGAAAAAATGCTTCGAGCGGGCTGCGGAAAAGCGTCATGTAGATCCTCTAT CTAGCATTGTTGCTTCGTGTTCATGGGGAAAACCAGTTGCTGTTGGTACCGGATCCCGGTTTGATATCCTATGGGATATAAAGGAGTCATCCTTCAGTCA AAATGAAAGTATGGATATCTACGGATTTCTGAATATGGTCAGAACTACTAAAATTGGAGAGGAAGCAATACCTGGTTCTCTGGGTTTTGAAGTCGATGAT CTTATTCCTGAGGACGATGACTGGAACATGTCCCCAGAGCGGGAATCTGGGATTGAGAAGCCCACTTTTGAAGACAGTGCTGAACTTTGTATTGCTGACA ATGCTGATTCAAGTTGGGATATTGGAGCTGGAAAGGAGCAAGGAACGACTGTATGGGGTGCAGCTGAAGAATCTGGTTGGGACTTGAAAGCAAGTATGAC TAATGACCAAAAGGAATCTGATGAGCAGCAGCCTTGGTCTTCTTGGGGAGCTGCAACAACCAAAAAACAGGAAGAATCTTGCAAATCTGACTGGGATACC AAGGTAACTTCCGGTGCCTTAGAGGTACCTGGTGGATGGGGAGCAGCTGGGTCAAGAACTCAAGCCGAATCTGAGAAGTCTACCTGGGATAAACCAGCTG AGAAGTCTACTTGGGATAAACCTGCTGAGAAGTCTACTTGGGCTACCGAGAAGGAACCGGAGAAGTCTAGCTGGAATGACACTGCTGCTTGGCAGTCAAG TGGGGAAAATAAAGCTGTTAACTGTGGCTCGGATTGGACTGCTAAACCTAAAGTCCGAGAGGAACATGATCAACATCAGTCTTGGTCTGGATGGAAATCA GCTGCACCCAGAAGCCAAGACGAATCCGGCCAGCCTAGTGGGAATGGAACTGCGGCCTGGCAGAAAAATAGGAAACCAGAATCTGATAAGCCTGGCTCAG ATTGGTCGGTGGAAGCATTGAATGAACCCAACAAGCATCAGCCTTCGTCTAGATGGGGGGCAGCAACTAAGGAGAATGCATGGTCTAAGGAGGATAATGG TGGTGTTATTCAGGATGAACGTTCACACGGCTGGGGCTCCCAAAAGCCAGCTGGTGGTTCAGATGGGTGGGGTGTGCAAAGTACGGGAGGTGACTATGGC AGTGATGGGAGTCAGCAGCATGGTTGGGGTTCCCAAAAGCCAGCTGGAGGTTCAGATAGGTGGGGTGTGCAAAGTACAGGAGATGACAATGGCAGCGACG GGAGTCAGCAGCATGGTTGGGGCTCCCCAAAGCCAGCTGCAGGTTCAGATGGGTGGGGTGGGCGACAAAAGAATGGAGACTTCAAGAAAAATCGCCCTGA AGGCTCACGAGGTTGGGGGAACAATCCTGACTGGAAGCCCAGGAAGAATTTCCCTCCCAAGTCTCCAGGCATGGGAAGAGAGGAGTCTGGGTCTGGTGGC ATGGGTTTTATGTATACCGCAACCAGGCATCGTATGGACTTGTTCAGTACAGAAGAGCAAGGCATTCTTGCTGTTGTAGAGCCGTTGATGCTGGACATCA GGAGGATTATGCATAATGCCGGGTACAATGATGGGGATCGATTGTCCGCTGATGATCAGAAATATATAGTAGACAACGTCTTCAATTACCATCCTGATAA GGTGGCAAAGACGGGCGCTGGCATGGATTATATCACTATCAACAAGCACACAGATTTCAAGGACACCAGATGCCTCTACATCGTGTCCACTGACGGGTCT AGGCAGGATTTCTCGTACCGCAAGTGTCTGGAGAACTTGATAAAGGAGAAGTACCCCGATCTAGCCGAGGAGTTCAACAGCAAGTACTTCGCGAAACGGA CTGGAGGGAACAACAACCGTCCACCACCGAAACCCGAGTCACCGTCCATTCTGGGGAGCATCCCGGAGACACCTCCTGGAGGAGGTGAGGAGCAGTAG
AA sequence Show only first row Show all	>Lus10016332 pacid=23161873 polypeptide=Lus10016332 locus=Lus10016332.g ID=Lus10016332.BGIv1.0 annot-version=v1.0 MLKSYFYDRAAAQQLAMFLSYSLSSPSLFKAKQHGPYWTALQILQSSLPASFECSEDMYLISKSNILKVDHDRDVLQNILNEVATSIFFQKGPEAVILFF NSVQPLLMENLYSKGFSISLEDFSLSENIRKNIQRHFEVMARIRSTATYNERVELQIENCIQKVKQPVVDFILESSALADLIHSKSDSGVKKVVEQIGFL GLQISDLGKLYSKVLVEDAASLFVSKYPSDVEYPSAQYGLVKGCFFRGLDPYEEMIHSISSREVMIRSSRGLSEPGTLFKNLMAVLRDVVICYDDTVRNV CSNLIIQFQYGEAAGTKFQSSLAAGEPVGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEILLCRVGFKNNQNDRRVILYLNECGCGKKYCQEKAAYLVK NHLEKVSLKDTATSFMIEYTRQPNDFRIDSGLVGHIHLTKRKLQSLKIGMHDVLQKCQHTINLLGKSKKELGKLYKMTTLSVRLNWYVVETSSCDYEMHI LLTSLLVLLSSECCSFPQSCKDESLETPCLMFCLGETYDGNLEKTMELLAERICPVLMETIVKGDERVSSANIIWASPDTTSWIRNPSRTKEKEGEVALD IVLEKKAVKQSGDAWRTVLDACLPVIHLIDTTRSVPYAIKQVQGLLGISCAFDQAVQRLSTSVTMVAKGLLKEHLFLLANSMTCSGNLVGFNPAGIKALS RSLDIQAPFTEATLYTPKKCFERAAEKRHVDPLSSIVASCSWGKPVAVGTGSRFDILWDIKESSFSQNESMDIYGFLNMVRTTKIGEEAIPGSLGFEVDD LIPEDDDWNMSPERESGIEKPTFEDSAELCIADNADSSWDIGAGKEQGTTVWGAAEESGWDLKASMTNDQKESDEQQPWSSWGAATTKKQEESCKSDWDT KVTSGALEVPGGWGAAGSRTQAESEKSTWDKPAEKSTWDKPAEKSTWATEKEPEKSSWNDTAAWQSSGENKAVNCGSDWTAKPKVREEHDQHQSWSGWKS AAPRSQDESGQPSGNGTAAWQKNRKPESDKPGSDWSVEALNEPNKHQPSSRWGAATKENAWSKEDNGGVIQDERSHGWGSQKPAGGSDGWGVQSTGGDYG SDGSQQHGWGSQKPAGGSDRWGVQSTGDDNGSDGSQQHGWGSPKPAAGSDGWGGRQKNGDFKKNRPEGSRGWGNNPDWKPRKNFPPKSPGMGREESGSGG MGFMYTATRHRMDLFSTEEQGILAVVEPLMLDIRRIMHNAGYNDGDRLSADDQKYIVDNVFNYHPDKVAKTGAGMDYITINKHTDFKDTRCLYIVSTDGS RQDFSYRKCLENLIKEKYPDLAEEFNSKYFAKRTGGNNNRPPPKPESPSILGSIPETPPGGGEEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	0	1
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	1.0	0.9685
AT2G04660		APC2	anaphase-promoting complex/cyc...		Lus10026619 [exp]	1.4	0.9581
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	1.7	0.9510
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	2.0	0.9455
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	2.2	0.9448
AT5G52290		SHOC1	shortage in chiasmata 1 (.1)		Lus10038861 [exp]	3.2	0.9297
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10033287 [exp]	3.7	0.9240
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10019220 [exp]	4.2	0.9429
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Lus10024469 [exp]	4.9	0.9264
AT3G22790			Kinase interacting (KIP1-like)...		Lus10039359 [exp]	6.6	0.9031

Compare expression of checked genes

Lus10016332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.