Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40030 413 / 1e-130 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT1G63020 76 / 2e-14 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT5G60040 50 / 2e-06 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 50 / 4e-06 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT3G57660 46 / 5e-05 NRPA1 nuclear RNA polymerase A1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002748 [exp] 706 / 0 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10002955 [exp] 65 / 6e-11 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10006339 [exp] 61 / 8e-10 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10041856 [exp] 52 / 9e-07 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10028403 [exp] 51 / 1e-06 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10015971 [exp] 49 / 8e-06 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10013536 [exp] 47 / 3e-05 AT5G60040 1506 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10040493 [exp] 45 / 0.0001 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 45 / 0.0001 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G196900 [exp] 517 / 8e-169 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G027232 [exp] 300 / 3e-91 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 63 / 3e-10 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.001G341900 [exp] 52 / 8e-07 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 47 / 2e-05 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.006G055300 [exp] 45 / 6e-05 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04997 [flax] [poplar] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF00623 [flax] [poplar] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
Representative CDS sequence Show only first row Show all	>Lus10016333 pacid=23161826 polypeptide=Lus10016333 locus=Lus10016333.g ID=Lus10016333.BGIv1.0 annot-version=v1.0 ATGGAAGAAAAGCTTGAGCCACCAATTCTGGAAGGGGAGATAGTTGGAATCCGATTTGGGTTGGCCACTCATAAAGAAATATGTACGGCATCTATAAGTG AATGTCCTATCAGCCATTCAAGTCAACTTACCAACCCGTTTCTAGGGTTGCCTTTGGAGTTTGGCAAATGCGAGTCTTGTGGGGCTTCGGAGGTTGGGCA ATGCGAAGGTCACTTTGGCTATATGGAGTTGCCAATACCAATATATCACCCCAGCCATGTTGCTGAATTGAAGCGTCTCTTGAGCTTGTTATGCTTGAAG TGCTTGAAGATGAAACGGAATAAGGTTCAAATGAAGCCCAGTGGTATTGCTGAACGGGTGGCATTGCTGAACGAATGCTTTCATGTTGAAGCTTCACAAG TGTCAATTAGAGACTATCAGACAACTGATGGTGTATGGCTTTTGCAACTGAAAGTTCCATCTAGATTAAAACTTACAGATGATTTATGGAACTTCCTAGA AAAATATGGCTTCCGGTATGGTCATGGCCACAGTCGTACACTGCTTCCCTGTGAGGGCTATTTGCCGAACGATGCATATATCTTTCGGTTTCTGCCAGTT CCTCCGAACTGTCTCTCTGTGCCCGACATCTCGGATGGTGTCAACATCATGGCTGCAGATCTATCTACAACAGTGCTGAAGAAAATTTTAAAGCAAATTG AGACTATTAAAAGTTCACGCTCCGGTCCACCTAATTTTCAGTCTCATCAAGTTGAGGTCGTTGATCTGCAATCAGCTGTTGATCAGTATCTTCAAATTCG AGGGATGACAAAATCTTCTCGTGAAGCCGATGGCGCTCGATTTGGGGTGAGGAATGAGTCCTCCGAGTCTGCTACGAAAACGTGGCTGGAGAAGATGAAG ACCTTGTTCCTAAAGAAAGGCTCTGGGTTCTCATCTCGTACTGTTATAGCTGGGGATGCGTATACAGAAGTGAGTCAGATTGGTATTCCCCTGGAAATTG CTCAGAGAATCACTTTTGAGGAGAGGGTTAATGATCACAACATCAGTCATCTACAGGAGCTGGTTGACAACAAGCTGTGTCTCACATATAGGGATGGTTC CAGCAGATTCTCCCTCAGGGAAAGTTCGAAAGGTCACACATCTCTGAGAGTCGGGCAGTTCGTCCTGAGCCTTTAG
AA sequence Show only first row Show all	>Lus10016333 pacid=23161826 polypeptide=Lus10016333 locus=Lus10016333.g ID=Lus10016333.BGIv1.0 annot-version=v1.0 MEEKLEPPILEGEIVGIRFGLATHKEICTASISECPISHSSQLTNPFLGLPLEFGKCESCGASEVGQCEGHFGYMELPIPIYHPSHVAELKRLLSLLCLK CLKMKRNKVQMKPSGIAERVALLNECFHVEASQVSIRDYQTTDGVWLLQLKVPSRLKLTDDLWNFLEKYGFRYGHGHSRTLLPCEGYLPNDAYIFRFLPV PPNCLSVPDISDGVNIMAADLSTTVLKKILKQIETIKSSRSGPPNFQSHQVEVVDLQSAVDQYLQIRGMTKSSREADGARFGVRNESSESATKTWLEKMK TLFLKKGSGFSSRTVIAGDAYTEVSQIGIPLEIAQRITFEERVNDHNISHLQELVDNKLCLTYRDGSSRFSLRESSKGHTSLRVGQFVLSL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016333 [exp]	0	1
AT3G55160			unknown protein		Lus10007253 [exp]	3.6	0.9602
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10019032 [exp]	3.7	0.9537
AT1G26170			ARM repeat superfamily protein...		Lus10031911 [exp]	6.7	0.9487
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	6.9	0.9530
AT3G55160			unknown protein		Lus10015366 [exp]	7.2	0.9491
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	7.3	0.9450
AT1G76740			unknown protein		Lus10028114 [exp]	7.7	0.9420
AT2G22400			S-adenosyl-L-methionine-depend...		Lus10020217 [exp]	8.8	0.9449
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Lus10002552 [exp]	9.4	0.9183
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10019588 [exp]	12.4	0.9282

Compare expression of checked genes

Lus10016333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.