Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19420 908 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 876 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 679 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G69710 604 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G76950 569 / 0 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G23270 554 / 0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT4G14368 553 / 0 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G47660 489 / 8e-159 Regulator of chromosome condensation (RCC1) family protein (.1) AT1G65920 461 / 3e-147 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G63860 178 / 2e-48 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002751 [exp] 1506 / 0 AT5G19420 949 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10024157 [exp] 1156 / 0 AT5G19420 1279 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10039525 [exp] 1036 / 0 AT5G19420 1245 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10009701 [exp] 927 / 0 AT5G19420 1567 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10036030 [exp] 921 / 0 AT5G19420 1644 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Lus10042800 [exp] 653 / 0 AT5G42140 1461 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10029772 [exp] 584 / 0 AT5G42140 1463 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10028600 [exp] 583 / 0 AT1G76950 1516 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10018904 [exp] 582 / 0 AT1G76950 1520 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G026900 [exp] 1026 / 0 AT5G19420 1281 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.003G197600 [exp] 1024 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.T124906 [exp] 1020 / 0 AT5G19420 1292 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 947 / 0 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.001G276900 [exp] 879 / 0 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 717 / 0 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.008G167500 [exp] 625 / 0 AT4G14368 1266 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.002G070300 [exp] 593 / 0 AT5G42140 1422 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.004G080900 [exp] 514 / 6e-167 AT1G65920 940 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Potri.017G139600 [exp] 509 / 5e-165 AT1G65920 937 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0390 [flax] [poplar] PF08381 [flax] [poplar] BRX Transcription factor regulating root and shoot growth via Pin3 CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10016335 pacid=23161896 polypeptide=Lus10016335 locus=Lus10016335.g ID=Lus10016335.BGIv1.0 annot-version=v1.0 ATGTCACATATTGTGCCTCCCAGGGCTTTCTTTCCATCAGAATCTTCTTATGGATTGGTTCATTCTCGGTCATCCGGTAGCTCGGATGGGAAAAATGGGC GTAACAATGGTAGAAATGCAGATGCTTTTAGAGTGAGCTTATCAAGCACCGTTAGTTCATCAAGCCAGGGTTCTGGTCATGATGATAGTGACACTGTAGG TGATGTATATATGTGGGGAGAAGGCATCGGGGATGGTATTTTGGGTGGAGGTGTGCACAGAGTTGGAGCTTCTGGTCTGGCTATGGATTCTTTTCTGCCG AGACCCTTAGAATCTGCATTCATATGGGATGTTCAAGCTATAGCTTGTGGTCGGCTGCATGCTGCTTTCGTGACAAAACAAGGATCAGTTTTCACTTGGG GTGAGGAACTTGGAGGTAGGCTTGGACACGGTATCGATTCCAATGTCTTGTATCCTAAACCTTTAGATGGGCTTAAAAACATCAATACTGAACTTGTTGC TTGTGGAGAGTATCATTCTTGCGCCGTATCTCTTTCTGGTGATTTATATATTTGGGGTAATAGTCAATGGGTGCCAAAAAAATTAAACGGGCCACTGGAG GGGATCCCTGTCTCGTCGGTATCATGTGGACCTTGGCACACTGCTGTTGTAACTTCAGCTGGTCAATTGTTCACTTTCGGAGATGGAACTTTTGGAGTTT TAGGACATGGTGACCGTAGTAGCGTATCAATGCCAAGAGAGGTGGAGTCGCTTAAGGGCCTTCGTACTATGCGGGTAGCTTGTGGTGTATGGCATACTGC CGCAATTGTTGAAGTAATAGTTGGATCTTCCAATACAACCAGTTGTTCAGGAAAGCTATTTACGTGGGGAGATGGTGATAAAGGTCGTCTAGGCCACGGT AATATGGTAGCAAAACTAGTACCTACTTGTGTCTCTGCTCTTGGTGATTCTAACTTCTGTCGAGTTGCCTGTGGACACAGCATGACCGTTGGGCTTACAA CTAAAGGGCATGTTTACACGATGGGAAGCTCTGTATATGGTCAGCTCGGGAATCCTCAAGCTAGCAGTGAGGTGCCAACTCGTGTAGGGGGGAAGCTTGC AAATAATTTTGTCGAGGATCTGGCTTGTGGTGCCTTTCATGTGGCTGTTTTAACTTCCAAGTCTGAGGTTTATACTTGGGGAAAAGGTGCAAATGGTCGA TTGGGTCATGGTGATGCTGATGATAGAAGTTCTCCGACGTTGGTTGAAGCTTTGAAAGATAAACAGGTCAAAAGTATTGTCTGTGGCACTAGTTTGACAG CAGCTATATGTCTTCACAAGTCAGCATCTAGTGATCAGTCAATGTGCTCTGGCTGCCGTTTACCTTTTAATTTTAAAAGGAAACGACACAATTGCTATAA TTGTGGGCTTGTCTTTTGCCATTCATGCAGTAGTAAAAAGTCTCTAAACGCTGTCATGGCATTGAATCTGAACAAAGCTTGTAGAGTATGTGACTATTGT TTTCAGAAGCTTAGAAAGGCTGAAACTGCGTCGTCATCAAGTCAGTCTAGTCTAAGTAGAAGAGTTACTGGCCAAGGAAGAAATGAAGCTTTTGAGAGAA GTGAAAATGTGGCTTTGAAACCTCAGACTCGTATCGGAAGGAGATTTTCCCTCCAGTCGTCATCTATAGACGTGGACAGTGGATATACGAAGAGAAACAA GAAATTGAATTCCATTAGTACCCAAGTTTCCCCCACGGCAGCTGATTTTAATCACAACCCATTTCACAACTCGAAGTCGATTGGATCATCTAAGAAATTT TTCTCCGCTTCAGTTCCTGGGTCAAGAATGATGTCACGTGCAACATCACCGACGACATCGAGGCGTTCCAGTCCACCCCGTGCCACAACACCGTCTCCAA TTTTGGCGTCACATACAGTGCTGAGGACCGGTGTGGATGAGGCCTTCAAGATTCGCGATGGCTTGAGCAAAGAAGTTGTTAAATTAAAAGCTCAGGTTGA AGAGCTCACTCGGAAAACTCGGATTCAGGAGATCGAATTACAAAGGGTAACTGGACAGTTGAAGGAAGCTATTGCTCTAGCGAACGAGGAGAGTGCAAAG TCCAGAGCAGCCAAGGAAGTGATTAAATCGCTTACTGCCCAATTGAAGGATGTAGCTGAAAGACTACCTGTTGGAGCAGCAAGAAGCATTAATCCACCGA GTTCCCGTAGCTCCGGCACTAGTCCTCACGATGTTGTTCCTTTCGAAACTTTCGGCCAACTGAGGTATCTCACAGACACAAACGAACTAGATTCAAATGG TTCGGAGAGCATTCTGATCTCCCAACGGTCAGGTAGCTCCACCGGCCGAATGTCAAGCATTTGTGAGTTGGTGAATGGGGAATTGGGTACCAGGAGCAAG AACAGAACTGCAAAAGTCGAACCCTGCCATAGGGATGAATGGGTGGAGCAAGACGAAGCGGGTGTTTATATCACCCTAGTCTCATTGCCCTCAGGAGCCA AAGACCTCAAGCGAGTCCGGTTCAGTCGAAAGCGGTTTAGCGAGAAGCAAGCAGGACAGTGGTGGGCGGCAAACAAGGAGAGAGTGTACCGACAGTACAA CGTCCCGATGGAGGAGAATTCCGTGGTCAGCATGGGAAAAGAAGGCTTATCTTGTTAG
AA sequence Show only first row Show all	>Lus10016335 pacid=23161896 polypeptide=Lus10016335 locus=Lus10016335.g ID=Lus10016335.BGIv1.0 annot-version=v1.0 MSHIVPPRAFFPSESSYGLVHSRSSGSSDGKNGRNNGRNADAFRVSLSSTVSSSSQGSGHDDSDTVGDVYMWGEGIGDGILGGGVHRVGASGLAMDSFLP RPLESAFIWDVQAIACGRLHAAFVTKQGSVFTWGEELGGRLGHGIDSNVLYPKPLDGLKNINTELVACGEYHSCAVSLSGDLYIWGNSQWVPKKLNGPLE GIPVSSVSCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRSSVSMPREVESLKGLRTMRVACGVWHTAAIVEVIVGSSNTTSCSGKLFTWGDGDKGRLGHG NMVAKLVPTCVSALGDSNFCRVACGHSMTVGLTTKGHVYTMGSSVYGQLGNPQASSEVPTRVGGKLANNFVEDLACGAFHVAVLTSKSEVYTWGKGANGR LGHGDADDRSSPTLVEALKDKQVKSIVCGTSLTAAICLHKSASSDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLNAVMALNLNKACRVCDYC FQKLRKAETASSSSQSSLSRRVTGQGRNEAFERSENVALKPQTRIGRRFSLQSSSIDVDSGYTKRNKKLNSISTQVSPTAADFNHNPFHNSKSIGSSKKF FSASVPGSRMMSRATSPTTSRRSSPPRATTPSPILASHTVLRTGVDEAFKIRDGLSKEVVKLKAQVEELTRKTRIQEIELQRVTGQLKEAIALANEESAK SRAAKEVIKSLTAQLKDVAERLPVGAARSINPPSSRSSGTSPHDVVPFETFGQLRYLTDTNELDSNGSESILISQRSGSSTGRMSSICELVNGELGTRSK NRTAKVEPCHRDEWVEQDEAGVYITLVSLPSGAKDLKRVRFSRKRFSEKQAGQWWAANKERVYRQYNVPMEENSVVSMGKEGLSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19420			Regulator of chromosome conden...		Lus10016335 [exp]	0	1
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10006378 [exp]	6.0	0.8374
AT4G32350			Regulator of Vps4 activity in ...		Lus10034905 [exp]	11.8	0.8190
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	12.9	0.8494
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	16.2	0.8283
AT4G17140			pleckstrin homology (PH) domai...		Lus10003007 [exp]	22.9	0.8391
AT4G17140			pleckstrin homology (PH) domai...		Lus10011036 [exp]	24.1	0.8380
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10027906 [exp]	25.1	0.8076
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	27.1	0.8160
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	27.8	0.8292
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Lus10032897 [exp]	38.1	0.7766

Compare expression of checked genes

Lus10016335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.