Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23290 253 / 3e-88 RPL27A, RPL27AB RIBOSOMAL PROTEIN L27A, Ribosomal protein L18e/L15 superfamily protein (.1) AT1G70600 249 / 2e-86 Ribosomal protein L18e/L15 superfamily protein (.1) AT1G12960 130 / 3e-40 Ribosomal protein L18e/L15 superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004617 [exp] 290 / 1e-102 AT1G23290 258 / 5e-90 RIBOSOMAL PROTEIN L27A, Ribosomal protein L18e/L15 superfamily protein (.1) Lus10026698 [exp] 286 / 6e-101 AT1G23290 256 / 2e-89 RIBOSOMAL PROTEIN L27A, Ribosomal protein L18e/L15 superfamily protein (.1) Lus10036855 [exp] 281 / 3e-99 AT1G70600 255 / 8e-89 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10006207 [exp] 279 / 3e-98 AT1G70600 254 / 1e-88 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10039528 [exp] 277 / 2e-97 AT1G70600 264 / 2e-92 Ribosomal protein L18e/L15 superfamily protein (.1) Lus10024161 [exp] 275 / 1e-96 AT1G70600 263 / 6e-92 Ribosomal protein L18e/L15 superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202300 [exp] 266 / 2e-93 AT1G70600 238 / 5e-82 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.008G187000 [exp] 264 / 2e-92 AT1G70600 238 / 3e-82 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.016G069000 [exp] 263 / 4e-92 AT1G70600 268 / 7e-94 Ribosomal protein L18e/L15 superfamily protein (.1) Potri.010G045800 [exp] 263 / 6e-92 AT1G70600 237 / 1e-81 Ribosomal protein L18e/L15 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10016336 pacid=23161885 polypeptide=Lus10016336 locus=Lus10016336.g ID=Lus10016336.BGIv1.0 annot-version=v1.0 ATGGCTACCGGCTTGAAGAAGAACCGCAAGAAGAGAGGCCACGTCAGCGCTGGACACGGCCGTGTCGGGAAGCACAGGAAGCATCCCGGAGGTCGCGGTA ACGCTGGAGGCATGCACCACCACCGTATCCTCTTCGACAAGTACCATCCCGGTTACTTCGGGAAGGTCGGCATGAGGTACTTCCACAAGCTCAAGAACAG GTTCTTCTGCCCCATCGTCAACATCGACAAGCTCTGGTCGATGGTACCTCAGGAGGTGAAGGACAAAGCCGGAAAGGATGGCGCCAGTGCTCCGATGATC GACGTCACTCAGTTCGGGTACTTCAAGGTCCTTGGGAAGGGCGTCTTGCCTGATAATCAGCCCATCGTTGTGAAGGCTAAGCTCGTGTCCAACCCCGCCG AGAGGAAGATCAAGGAAGCCGGCGGTGCTGTTGTCCTCACTGCCTAG
AA sequence Show only first row Show all	>Lus10016336 pacid=23161885 polypeptide=Lus10016336 locus=Lus10016336.g ID=Lus10016336.BGIv1.0 annot-version=v1.0 MATGLKKNRKKRGHVSAGHGRVGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLKNRFFCPIVNIDKLWSMVPQEVKDKAGKDGASAPMI DVTQFGYFKVLGKGVLPDNQPIVVKAKLVSNPAERKIKEAGGAVVLTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	0	1
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	1.0	0.9710
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	3.0	0.9616
AT5G48760			Ribosomal protein L13 family p...		Lus10007137 [exp]	3.5	0.9621
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	3.9	0.9282
AT5G43970		ATTOM22-V, TOM2...	TRANSLOCASE OUTER MITOCHONDRIA...		Lus10022876 [exp]	4.2	0.9273
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	4.5	0.9499
AT3G49910			Translation protein SH3-like f...		Lus10011540 [exp]	6.9	0.9137
AT5G67630			P-loop containing nucleoside t...		Lus10019267 [exp]	7.3	0.9103
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	7.7	0.9181
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Lus10005586 [exp]	9.0	0.9227

Compare expression of checked genes

Lus10016336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.