Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 410 / 1e-127 disease resistance family protein / LRR family protein (.1) AT4G20140 252 / 5e-69 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G15080 241 / 5e-66 AtRLP19 receptor like protein 19 (.1.2) AT1G71400 239 / 6e-66 AtRLP12 receptor like protein 12 (.1) AT4G13920 239 / 1e-65 AtRLP50 receptor like protein 50 (.1) AT1G45616 233 / 2e-63 AtRLP6 receptor like protein 6 (.1) AT5G07280 234 / 4e-63 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 230 / 6e-62 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G11080 227 / 2e-61 AtRLP35 receptor like protein 35 (.1) AT3G11010 224 / 8e-61 AtRLP34 receptor like protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016340 [exp] 1286 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1266 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1259 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1241 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 1229 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1209 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 1166 / 0 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1142 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1130 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 536 / 4e-174 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 519 / 5e-168 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 515 / 1e-166 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 513 / 4e-166 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 509 / 1e-164 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 506 / 1e-163 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 503 / 4e-162 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 456 / 3e-144 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 452 / 3e-141 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 430 / 2e-133 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016337 pacid=23161817 polypeptide=Lus10016337 locus=Lus10016337.g ID=Lus10016337.BGIv1.0 annot-version=v1.0 ATGCATCGCGTTGCTTCTAGCGGAAGAGACCCTTCGATGTCGTTTGCTGCGGGCAATGCTATGCTGCCGGAGGAGATTCCATTCGATTCACCGCAGTGCG CACCATTCCTGGGAATTTCCACTGCATTTCATGAGGCTGTTGTTCTTGTTTGGTTGAGTTGGATGCCTTTCTGCTGCTACGGAGCCTATGCTGTAGGCTG CAATGAAGCAGAAAGGGAAGCCCTATGGAAATTCAAGGCTGATCTCCAAGACCCGTCAAGCCGATTTTCTTCTTGGGTTAATGGCAGCACGGATTGTTGC AAATGGCGGGGTGTTGTATGTGGCAAAGTTACTGGCCATGTCACGCAGCTTCGCCTCCAGTGTCCTGGTCTTTGTCCCCGGGAATCTATGCTCAAGGGTA AGTTAAATCCTTCCTTACTTGAGTTGAAGCATCTCAGTTATTTGGACCTGTCTGGAAATGATTTTCAAGGGATTCCTATTCCACGGTTTCTTGGTTCTAT GACAAGTTTGAAATCTCTTTTCCTTGAGTGGTCTGGATTTGGGGGAGTCATTCCTCACCAACTTGGAAACCTCTCGAATTTGGTAGAACTTGGTATCAGA GCTAGTAGTAAGGACTATGTGCTATATGCTGATAGTTTGCAGTGGCTTTCTGGTATGCCTGCACTGGAATACCTTGCTCTAAGCGGCGTTAATCTTAGCA CTGCTTCTAATTGGTTCAACATGATGAATGGAATCCCGTCTCTTTCAGAATTGTATCTATCATATTGTGAAATCAGTGGTGACTTTCCTTTAGTACATGT CAACCTGTCATCGTTGTTGGTTCTCGATCTGGGTTTCAATAGTTTTGGTCCTACTTCATTTCCTAGCTGGGTGTCTCAGCTGAGAAGCTTGAGGTCATTG AATCTTCGAGCGACAAACCTCAGAGGTCCAATCCCCGTCGAGCTTCGGAACCTTACCTCTCTTAGAGCTCTTAAACTGTTTTGGAACAACTTCAATGATT CAATACCAGATTGGCTGTTCAGTTTTCGTCACCTCGAGGACCTGGATATTCAACAAAGCGAGTTGGTTGGTGATGTACCAATTGGAATTGGGAACTTGAC ATCTCTTATTAATCTGGACTTATCATTCAATCGTGGTCTTACATTTGAAGGAGGGATGCCAGCGTCATTCAGAAGCTTTTGCCAGTTGGCCTCACTGAAA CTGTCATACATAAAACTAAAACAAAGTGTATCAGATGTTCTTAGGATTCTTGAAGGGTGTCCTTCTAGTACGCTAGAGGTGTTGTCTTTGAGAGCTTGTC AACTATTTGGTCAGTTGACTGATCAGATTGGCAAGTTCAAGAGGCTAAGCCATCTTGCGCTCGATGACAACTCCATATCTGGTCCACTACCGATGTCATT AGGGGAATTGACATCATTGTATTATGTTAACCTTGCAAGTAACCAGATTAATGGGACTATTCCAACAAGTTTTGGGAGACTTGCAGAGCTTGAAATTGTT GACATTTCTCATAACTTAATGGAAGGTATTGTTTTGTCCGAAATTCACTTTGCTAATCTCACAAGCTTGTTTAGATTCGAAGCAGCTGGAAATCAAATTG TGTTCAAAGCTAAATCTGATTGGGTTCTTCCGAAGAAACTTACAATATTGGACTTGAGTTCATGGTACATTGGACCTGGCTTTCCAAAATGGCTCCTCCA ATCAAGTCAACATCTCAGATCTCTGGATCTGTCCAACTCTGGAATTGCAGAACCCATTCCTGAGTGGTTCTGGGGCTCACAAGCAGTGTTCTACTACCTC AATCTTTCTCACAATCAGATCTCAGGAATGCTTCCAAGTTATATCTCTGTTATTTCCTCCGACTCTATGTTTGACTTCAGCTGGAATAACTTGGAGGGCC CACTGCCAGTTATCTCGTCCAATTTGACTGCATTGGACCTTTCCAATAATTTTTTCTCTGGAAGCTTGCACAAATTCCTGTGCTCCAATCCAGCTCAGAT GATGGACACACAGTTTCTCAATCTCGAAGGCAACCTTTTGTCCGAAGAGATACCAGATTGTTGGAGTAGTTGGGGTAGCTTGTATGTTTTAAGACTTGGC AACAATGAGTTGAGAGGTAGCATTCCAAATTCCATTGGAAGCTTAAGTTCCCTTCTGTCTTTGCGCTTTCAGAACAATAGCTTGACTGGTGAAATCCCTT TGTCTCTTAGCAACTGTTCTAGTCTAGTCTCTGTTGACTTAAGTGACAATGGATTTGAAGGGAACATTCCACAGTGGATTGGGGAAAGACTTACAAGGTT GTCCATCGTCAATCTACGTGGGAATAAGTTCCGGGGTGTCATCCCTGAGGAGCTTTGCCATCTGCAGCTTTTGCAAATCTTGGACCTTTCTCACAACTTT CTATATGGGAACTTACCAGAATGTGTAGCTAATTTCAGTGCTATGGCCAGTCCAATATATGATCGCGAGGGAGCAATTTACCTTTACTTCGGCGTTACGA AATCCTTTGTGGAATACCAGGTTCTTGTGGCACAAGGGAAGAGTAAGGCTTACAGCACCATATTGAATTATGTCAGAAGCTTGGACCTTTCCTGGAATAA CTTCTCAGGAGAAATTCCAAAGGAGATAACAAGCCTTGTGGCCTTGAAATATCTGAACCTGTCGAGTAATTCTCTGTCCGGTGCAATCCCAGAAAGTTTA GATGTCATGGAGTCTTTGGAATCTCTGGACTTGTCGGAAAACCAACTGTTTGGTGAAATCCCAGCAGGCATGGCAAGTCTGACATTCTTGAATCACTTGA ATTTGTCTTACAACAAGTTGAGTGGGAGAATTCCTTCAAGCACTCAACTGCAGAGCTTTGAATTGTCTAGCTTCATCGGCAACTCAAGACTCTGCGGCTC TCCATTGAACGTGAACTGCAGTAGAAAGAACACGGTGGCTGGTTCTGGTGAAGGGACCAAAGACTATGATCGGTATTGGTTCCCTCTTAGTGTAGTGCTT GGATTTGCTGTAGGGTTTTGGAGCATTGTTGGTACCGTAGCAGTCAACCAACAATGGATCACATGGTGA
AA sequence Show only first row Show all	>Lus10016337 pacid=23161817 polypeptide=Lus10016337 locus=Lus10016337.g ID=Lus10016337.BGIv1.0 annot-version=v1.0 MHRVASSGRDPSMSFAAGNAMLPEEIPFDSPQCAPFLGISTAFHEAVVLVWLSWMPFCCYGAYAVGCNEAEREALWKFKADLQDPSSRFSSWVNGSTDCC KWRGVVCGKVTGHVTQLRLQCPGLCPRESMLKGKLNPSLLELKHLSYLDLSGNDFQGIPIPRFLGSMTSLKSLFLEWSGFGGVIPHQLGNLSNLVELGIR ASSKDYVLYADSLQWLSGMPALEYLALSGVNLSTASNWFNMMNGIPSLSELYLSYCEISGDFPLVHVNLSSLLVLDLGFNSFGPTSFPSWVSQLRSLRSL NLRATNLRGPIPVELRNLTSLRALKLFWNNFNDSIPDWLFSFRHLEDLDIQQSELVGDVPIGIGNLTSLINLDLSFNRGLTFEGGMPASFRSFCQLASLK LSYIKLKQSVSDVLRILEGCPSSTLEVLSLRACQLFGQLTDQIGKFKRLSHLALDDNSISGPLPMSLGELTSLYYVNLASNQINGTIPTSFGRLAELEIV DISHNLMEGIVLSEIHFANLTSLFRFEAAGNQIVFKAKSDWVLPKKLTILDLSSWYIGPGFPKWLLQSSQHLRSLDLSNSGIAEPIPEWFWGSQAVFYYL NLSHNQISGMLPSYISVISSDSMFDFSWNNLEGPLPVISSNLTALDLSNNFFSGSLHKFLCSNPAQMMDTQFLNLEGNLLSEEIPDCWSSWGSLYVLRLG NNELRGSIPNSIGSLSSLLSLRFQNNSLTGEIPLSLSNCSSLVSVDLSDNGFEGNIPQWIGERLTRLSIVNLRGNKFRGVIPEELCHLQLLQILDLSHNF LYGNLPECVANFSAMASPIYDREGAIYLYFGVTKSFVEYQVLVAQGKSKAYSTILNYVRSLDLSWNNFSGEIPKEITSLVALKYLNLSSNSLSGAIPESL DVMESLESLDLSENQLFGEIPAGMASLTFLNHLNLSYNKLSGRIPSSTQLQSFELSSFIGNSRLCGSPLNVNCSRKNTVAGSGEGTKDYDRYWFPLSVVL GFAVGFWSIVGTVAVNQQWITW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	0	1
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10039056 [exp]	1.4	0.7737
AT2G22530			Alkaline-phosphatase-like fami...		Lus10035939 [exp]	1.4	0.7722
AT1G69630			F-box/RNI-like superfamily pro...		Lus10029588 [exp]	4.0	0.7614
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	4.2	0.7372
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	8.1	0.7450
AT1G04900			Protein of unknown function (D...		Lus10007135 [exp]	9.5	0.7330
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	9.7	0.7603
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032659 [exp]	12.6	0.7615
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	17.9	0.7382
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	25.1	0.7376

Compare expression of checked genes

Lus10016337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.