Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 369 / 2e-114 disease resistance family protein / LRR family protein (.1) AT4G20140 226 / 1e-61 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G15080 219 / 2e-59 AtRLP19 receptor like protein 19 (.1.2) AT5G44700 214 / 1e-57 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G46330 209 / 5e-56 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G45616 208 / 9e-56 AtRLP6 receptor like protein 6 (.1) AT5G27060 202 / 4e-54 AtRLP53 receptor like protein 53 (.1) AT3G23110 197 / 1e-52 EMB2800, AtRLP37 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) AT5G07280 198 / 2e-52 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71400 196 / 4e-52 AtRLP12 receptor like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002753 [exp] 1224 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1217 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1161 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1134 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1124 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1115 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1058 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1003 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 993 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 452 / 2e-144 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 417 / 2e-131 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 409 / 3e-128 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 407 / 4e-128 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 406 / 7e-128 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 404 / 6e-127 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 401 / 1e-125 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 386 / 4e-119 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 387 / 6e-119 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.003G196832 [exp] 368 / 2e-118 AT2G34930 203 / 8e-57 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016338 pacid=23161824 polypeptide=Lus10016338 locus=Lus10016338.g ID=Lus10016338.BGIv1.0 annot-version=v1.0 ATGGCCGCTAATTTCATGACTGTTCTTCTTGTTTGGATGAGTTGGATGTGTTTCTGCTGCTACGGAGCCTATGCTGTAGGCTGCAATCGATCTGAAAGAG AAGCCCTTTTGCAATTCAAGGCTGATCTCCAAGACCCTTCAATCAAATTGTCTTCTTGGGTTAATGGCAGTACAGATTGTTGCAAATGGCGTGGCGTTGT ATGCGACAACGTTACTGGCCATGTCACACAGCTTCGCCTCGATTGTCCTTATCTTTGTCTCCAGGACTCTGTGCTCAGAGGTAAGTTAAATCCTTCCTTA CTTGAGTTGAAGCATCTCAGTTATTTGGACCTGTCCGGAAATGATTTTCGAGGAATTCCTATTCCCCAATTTCTTGGGTCTATGACAAGTTTGAAATTTC TTTTCCTTGAGCGGTCTGGATTTGGGGGAATCATTCCTCATCAACTTGGAAATCTCTCAAACTTGGTAGAACTTGGTATTGAAGCTAGTCGTGGTGACTA TGTGCCATATGCTGATAGTTTGCAGTGGCTTTCTGGTCTGCCTGCGTTGGAATACCTTGCTCTTAGTGGTGTTAATCTTAGCACAGCTTCTGATTGGCTG GACATGGTAAATGCTGTTCCGTCTCTTTCACAATTGTATCTATCAGATTGTCAAATCAGTGGCGGCTTTCCTTTAGTACATGTCAACCTATCGTCGTTGT CCGTTCTTGATCTGCATTTGAATAGTTTTGTTCCAACGTCATTTCCGAGATGGGTTTCTCATCTGAAAAGACTGACTTCTTTGGATCTTCGAACGACAAA CCTCCGAGGTCCAGTTCCTGACGAGCTTCAGAACCTTACCTGTCTTAGAGCTCTGGAACTATCTTGGAACAAGTTCAATGGTTCAATACCAAATTGGCTG TTCAGTTTTCGTCACCTTGAGGACCTGTATATTCGACAAAGCGACCTGGCTGGTGATGTACCAATTGGAATTGGGAACTTGACTTCTCTTATGAATCTGG ACTTGTCATTCAATCATGGACTTAAATTTGAAGGAGGGATTCCAGCATCATTCAGAAGTTTTTGCCACTTGACATCACTGAAACTGTCATACGTAAAGCT GGAACAAAATGTATCAGAGGTACTTCAAATTCTGGGAGAGTGTTCTTCTAGCACGCTAGAGAGATTGTATTTGGATCACTGTCAACTATTTGGTAAATTG ACTGATGGGATTGGTAAGTTCAAGCGACTAAAGCATCTTGTGCTCAACGACAACTACATAACTGGTCCACTTCCGATGTCATTCGGGAAATTAGCATCCT TGAATTATGCAATTCTCGCAACAAACCGGATTAAGGGGACTATTCCAGCCAGTTTTGGGGGACTCTCAGAGCTTGATATGCTGACATTTCTCATAACTCA ATGGGTGTTATTTAATTTCCAAGCAGCTGGAAACCAAATTATATTCAAAGCTAAACCAGATTGGGTTGCTCCCAAGCGACTTCTAACATTGGACTTGAGT TCATGGTACGTTGGACCTGGCTTTCCGAAATGGCTCCAAGCAATTCAGTATCTCAATTCACTTGACCTGTCCAACTCTGGTATTGCAGAACCGATTCCTG ATTGGTTCTGGGGCTCACACCCAGTGTTTTACTACCTCAATCTTTCTCATAACCAGATACCAGGAATGCTTCCTAGTTATATCTCTGTTATTTCCGCCGA CTCAATGTATGACTTCAGCTGGAATAACTTGGAGGGCCCACTACCAGTCATTTCGCTGAATTTGACTGCATTGGACCTTTCCAATAATTTTGTCTCTGGA AATTTGTTCAAGTTCTTGTGCTCCAATCCAGCTCAGTTGAGGAACACACAGTTTCTCAATCTTCAAGGGAACTTTTTGTCTGGGGAGATACCAGATTGTT GGAGGAGTTGGGGGAGCTTGAAGGTTGTAAGACTTGGCAACAATGATTTGAGAGGAAACATTCCTAATTCCATTGGAACCTTAAGCTCTCTTCTGTCTTT GCGTATTCAGAACAACAGCCTGACTGGTGAAATCCCTTTGCCCCTCGGCAACTGCTCGAGTCTTGTCTCCGTCGACTTAAGTGACAATGGATTTGAAGGG AGCATTCCAAAGTGGATTGGGGAAAGACTTACAATGCTTTCCATCCTTACTCTCCGCCGGAATAAGTTCTCGGGGGTCGTTCCTGAGGAGCTTTGCCATC TGCAGCTTCTCCAAATCTTGGACCTTTCTCACAACTTTCTATATGGGAACTTGCCAGAATGTGTAACTAATTTCAGCGCCATGGCCAACTCAAATAATGA GGATCAAGGAGTAATTTACCTTTTCTTTGGCGGGGCGAAATCATTTGTGGAATACCAGGAGCTCGTGGCTCAAGGGCAGGTTAAGGCCTACAGTACCATA TTGAATTATGTCAGAAGTTTGGATCTTTCCTGGAATAACTTTTCAGGTGAAATTCCAAAGCAGATAACAAGCCTTGTGGTCTAG
AA sequence Show only first row Show all	>Lus10016338 pacid=23161824 polypeptide=Lus10016338 locus=Lus10016338.g ID=Lus10016338.BGIv1.0 annot-version=v1.0 MAANFMTVLLVWMSWMCFCCYGAYAVGCNRSEREALLQFKADLQDPSIKLSSWVNGSTDCCKWRGVVCDNVTGHVTQLRLDCPYLCLQDSVLRGKLNPSL LELKHLSYLDLSGNDFRGIPIPQFLGSMTSLKFLFLERSGFGGIIPHQLGNLSNLVELGIEASRGDYVPYADSLQWLSGLPALEYLALSGVNLSTASDWL DMVNAVPSLSQLYLSDCQISGGFPLVHVNLSSLSVLDLHLNSFVPTSFPRWVSHLKRLTSLDLRTTNLRGPVPDELQNLTCLRALELSWNKFNGSIPNWL FSFRHLEDLYIRQSDLAGDVPIGIGNLTSLMNLDLSFNHGLKFEGGIPASFRSFCHLTSLKLSYVKLEQNVSEVLQILGECSSSTLERLYLDHCQLFGKL TDGIGKFKRLKHLVLNDNYITGPLPMSFGKLASLNYAILATNRIKGTIPASFGGLSELDMLTFLITQWVLFNFQAAGNQIIFKAKPDWVAPKRLLTLDLS SWYVGPGFPKWLQAIQYLNSLDLSNSGIAEPIPDWFWGSHPVFYYLNLSHNQIPGMLPSYISVISADSMYDFSWNNLEGPLPVISLNLTALDLSNNFVSG NLFKFLCSNPAQLRNTQFLNLQGNFLSGEIPDCWRSWGSLKVVRLGNNDLRGNIPNSIGTLSSLLSLRIQNNSLTGEIPLPLGNCSSLVSVDLSDNGFEG SIPKWIGERLTMLSILTLRRNKFSGVVPEELCHLQLLQILDLSHNFLYGNLPECVTNFSAMANSNNEDQGVIYLFFGGAKSFVEYQELVAQGQVKAYSTI LNYVRSLDLSWNNFSGEIPKQITSLVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016338 [exp]	0	1
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	1.4	0.6900
AT1G22275		ZYP1b	Myosin heavy chain-related pro...		Lus10010242 [exp]	4.7	0.6890
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025533 [exp]	11.2	0.6265
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	19.5	0.6509
AT5G65380			MATE efflux family protein (.1...		Lus10015905 [exp]	20.3	0.6098
AT2G39580			unknown protein		Lus10029459 [exp]	43.7	0.6041
AT4G19890			Pentatricopeptide repeat (PPR-...		Lus10006083 [exp]	63.5	0.4893
AT2G34930			disease resistance family prot...		Lus10016337 [exp]	65.4	0.5604
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10016975 [exp]	66.5	0.5614
AT5G09300			Thiamin diphosphate-binding fo...		Lus10033480 [exp]	107.5	0.5283

Compare expression of checked genes

Lus10016338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.