Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 419 / 3e-131 disease resistance family protein / LRR family protein (.1) AT5G27060 241 / 3e-66 AtRLP53 receptor like protein 53 (.1) AT4G20140 238 / 1e-64 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G13920 233 / 5e-64 AtRLP50 receptor like protein 50 (.1) AT5G44700 234 / 2e-63 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71400 231 / 2e-63 AtRLP12 receptor like protein 12 (.1) AT3G11080 230 / 1e-62 AtRLP35 receptor like protein 35 (.1) AT1G45616 226 / 5e-61 AtRLP6 receptor like protein 6 (.1) AT2G15080 225 / 7e-61 AtRLP19 receptor like protein 19 (.1.2) AT1G47890 219 / 8e-59 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002755 [exp] 1452 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1439 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1352 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1283 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1241 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1097 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 1092 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1090 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 1088 / 0 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107000 [exp] 543 / 2e-177 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 523 / 1e-169 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 517 / 3e-167 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 515 / 1e-165 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 504 / 4e-163 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 500 / 1e-161 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 499 / 3e-161 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 495 / 1e-159 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 484 / 2e-153 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 481 / 1e-152 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016339 pacid=23161833 polypeptide=Lus10016339 locus=Lus10016339.g ID=Lus10016339.BGIv1.0 annot-version=v1.0 ATGACTGTTCCTGATGGCTTCCTTCTTGTTTGCTTGATTTGGATGAGTTTCTTCTGCTACGGAACCTATGGAGTAAGCTGCCATCAAGCTGAAAGAGAAG CTCTTTTGACTTTCAAGGCTGATCTCCAAGACCCTTCAGGACGGTTATCTTCTTGGGTTAATGGAAGCAAAGATTGCTGCGAATGGTCTGGTGTTGTATG TGACGACGTTACTGGCCGTGTCACTGAGCTCGACCTCCATTGTCGGGGTCTTTGTTTTGATGATTCTAGGCTCAAAGGTAAGATGAATCCTTCCTTACTT GAGTTGAAGCATCTCAGTTACCTGGACCTTTCTGACAATGATTTTCAAGGGGTTTCTATTCCGCGTTTTCTTGGGTCGATGATAAGTTTGCAAACTCTTT ACCTTGATCGGTCTCGATTCAGCGGACTCATTCCTCATCAGCTTGGAAACCTTTCAAACTTGCTACAACTTGGTCTCATGGGTGGTAACGTTGGCTACTT TCTATATGCTGATAATTTACAGTGGCTTTCTGGTCTCCCATCACTGGAATACCTTGATTTGGAAGAGGTTAATCTCAGTATTGCTTCTGATTGGCTGAAC ATGATAAATACAGTCCCAAATCTTAAAAGATTGTATCTATCAGATTGTCAAATCAGTGATGGCATTCCTGTAGTCCATGTTAACCTGTCATCTTTGTCAG TTCTTGATTTCAGTTTCAATCGATTTGGTCCAGCTTCATTTCCTAGCTGGGTTTCTCATCTGGAAAGTCTGACTTCTTTGAATCTCGAAGAAAACAACCT CAAAGGTCCTGTCCCTGGCGAGCTTCGTAACCTTACCTCTCTTAGAGCTCTTAAAATGTCATACAACAAGTTCAATGGTTCCATACCAGATTGGCTGTTC AGTTTTCGTTACCTCGAAGACTTGAATTTTGTTGGAAGCAATTTGGTTGGTGAATTATCAAATGGAATAGGGAACATGACCTCTCTTGTTAATCTAGACT TGTCATTCAATTATGGTCTTAAACTTAAAGCAGGTATTCCAGCATCATTCAGAAGCTTTTGCCATTTGAGATCACTGAAACTGTCATACGTAAAGCTGAA TCAAAGTGTTTCAGAGGTGCTTCAAATTCTTGATGAGTGTTCTTCTGGCACAGTAGAGAGATTGTACTTGAGTGGTTGTGAACTATTTGGTCAGTTGACT GATCGAATAGGCAAGTTCAAGAGACTAAAACACCTTTGGTTGGATGACAACTCCATATCTGGTCCACTTCCAATGTCATTTGGGGAACTGATATCCTTGA ATTATGTCAACATCGCAAGAAACCAGATTAATGGGACTATTCCAGAAAGTTTTGGAGAACTTGCAGAGCTTGAAGTTGCTGATATTTCTCAGAACTTAAT AGACGGCGTTGTTTCCTCCGAAATTCACTTTGCCAACCTCACAAAGTTGACTACTTTCCATGCAGCTGGAAACCAAATTGTGTTCAAAGCTAAACCAGAT TGGATCCCTCCCAAGCGGCTTACAATACTCGACTTGAGTTCATGGTACGTTGGACCTGGCTTCCCCAACTGGCTCCAATCAACTCATGATATCGTTTCTC TTGATCTGTCCAACACCGGAATTGCAGAACCAATTCCTGATTGGTTCTGGAGTAAGCATTCTCAGTTCTACTATCTCAACTTTTCTCACAACCAAATCCC TGGACGGCTTCCAAGTTTTGTTCCTGCTCACTCCTCTTACCAAATCACTGAAAATTTGTTTGACTTCAGCTGGAACCACTTGGAAGGTCAGCTTCCAGTT ATATCGTCCAATTTGACTGCATTGGACCTTTCTAATAATTTGCTATCCGGAAACTTGTTTAAGTTTCTGTGCTTCAATCCAACTCATGCGAGGAACACAC AGTTTCTCAACCTGCAAGGAAACCTTCTATATGGAGAGATACCAGAATGTTGGAGGACTTGGACGAAGCTGAAGGTTATAAGACTAGGCAACAACAAGTT GAGAGGAAGCATTCCAAAGTCTATTGGAACCTTGAGCTCCCTCTTGTCTTTGAGGTTTCAGAACAACAGTCTGACTGGTGAAATCCCCTTGTCCCTGGGG AACTGCACCACTATAGTCTCTATCGACTTAGGCGATAACAAATTGGAAGGGAACATTCCAAATTGGATTGGGGAAAGGCTATCAAGATTGGAAATCATCA ATTTACGTGGAAATAAGTTCACGGGGGACATTCCTGAGGAGCTTTGCCATCTGCAGCTTCTGCAAATCATGGACCTTTCTCATAACTATCTATCTGGGAA CTTGCCAGAATGTGTAGCTAATTTCAGCGCCATGGCCGATTCAAATAATGAGGATGAAGCAGTAATTTTCCTTTTCGCTGGCGGGGCTAAAACGTTTGTG GAGTACCAGGTCCTTGTGGCGCAAGGGCAGGTTAAGTCTTATAGCACCATACTGAATTACGTCAGAAGTTTGGACCTTTCCTGGAATAACTTCTCAGGAG ACATTCCAAAGCAGATTACTAGCCTTGCGGCCTTGCACTATCTCAACTTGTCGCACAATTCACTCTCAGGCTCGGTCCCGGGAGATTTAGGTGCCATGAC GTCGCTGGAATCTTTGGACATGTCTGAAAATCATCTGGCTGGTGCAATTCCACAAGGAATGGCAAGTCTGACATTCTTGAATCACTTGAACTTATCCTAC AACAACTTAAGTGGGAGAATTCCTTCAAGCACTCAATTGCAGAGCTTTCACCCATCAAGCTTCATTGGCAACAAGGGACTTTGCGGCTCTCCTTTGAATG TGAGCTGCAGCAGAATGAACTTGGTGCCTGGTTCTGGTGAAGGAAACGTAGACTATGATTTCTACTGGTTCTCCATCGGCGTAATGTTTGGGTTTGCATT CGGGTTTTGGGGCATAGTTGGTTCACTAGAAGTCAGCAAACGATGGAGAGTATTGTGTTTCGGTGTCCTGGATCACATTGGGATAAACTCTAGAGCTTTG TAA
AA sequence Show only first row Show all	>Lus10016339 pacid=23161833 polypeptide=Lus10016339 locus=Lus10016339.g ID=Lus10016339.BGIv1.0 annot-version=v1.0 MTVPDGFLLVCLIWMSFFCYGTYGVSCHQAEREALLTFKADLQDPSGRLSSWVNGSKDCCEWSGVVCDDVTGRVTELDLHCRGLCFDDSRLKGKMNPSLL ELKHLSYLDLSDNDFQGVSIPRFLGSMISLQTLYLDRSRFSGLIPHQLGNLSNLLQLGLMGGNVGYFLYADNLQWLSGLPSLEYLDLEEVNLSIASDWLN MINTVPNLKRLYLSDCQISDGIPVVHVNLSSLSVLDFSFNRFGPASFPSWVSHLESLTSLNLEENNLKGPVPGELRNLTSLRALKMSYNKFNGSIPDWLF SFRYLEDLNFVGSNLVGELSNGIGNMTSLVNLDLSFNYGLKLKAGIPASFRSFCHLRSLKLSYVKLNQSVSEVLQILDECSSGTVERLYLSGCELFGQLT DRIGKFKRLKHLWLDDNSISGPLPMSFGELISLNYVNIARNQINGTIPESFGELAELEVADISQNLIDGVVSSEIHFANLTKLTTFHAAGNQIVFKAKPD WIPPKRLTILDLSSWYVGPGFPNWLQSTHDIVSLDLSNTGIAEPIPDWFWSKHSQFYYLNFSHNQIPGRLPSFVPAHSSYQITENLFDFSWNHLEGQLPV ISSNLTALDLSNNLLSGNLFKFLCFNPTHARNTQFLNLQGNLLYGEIPECWRTWTKLKVIRLGNNKLRGSIPKSIGTLSSLLSLRFQNNSLTGEIPLSLG NCTTIVSIDLGDNKLEGNIPNWIGERLSRLEIINLRGNKFTGDIPEELCHLQLLQIMDLSHNYLSGNLPECVANFSAMADSNNEDEAVIFLFAGGAKTFV EYQVLVAQGQVKSYSTILNYVRSLDLSWNNFSGDIPKQITSLAALHYLNLSHNSLSGSVPGDLGAMTSLESLDMSENHLAGAIPQGMASLTFLNHLNLSY NNLSGRIPSSTQLQSFHPSSFIGNKGLCGSPLNVSCSRMNLVPGSGEGNVDYDFYWFSIGVMFGFAFGFWGIVGSLEVSKRWRVLCFGVLDHIGINSRAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016339 [exp]	0	1
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10026522 [exp]	7.9	0.7602
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	18.7	0.7313
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10041349 [exp]	25.3	0.7225
AT3G61790			Protein with RING/U-box and TR...		Lus10002761 [exp]	33.9	0.6980
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Lus10000343 [exp]	36.6	0.6818
AT5G40660			ATP12 protein-related (.1)		Lus10000142 [exp]	36.8	0.7095
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Lus10005494 [exp]	41.2	0.7086
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10016387 [exp]	43.5	0.6923
AT3G61790			Protein with RING/U-box and TR...		Lus10016348 [exp]	46.9	0.6550
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	61.1	0.6799

Compare expression of checked genes

Lus10016339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.