Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 435 / 3e-137 disease resistance family protein / LRR family protein (.1) AT4G20140 247 / 2e-67 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71400 239 / 4e-66 AtRLP12 receptor like protein 12 (.1) AT3G11080 236 / 1e-64 AtRLP35 receptor like protein 35 (.1) AT5G44700 235 / 2e-63 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G47890 230 / 3e-62 AtRLP7 receptor like protein 7 (.1) AT5G27060 226 / 4e-61 AtRLP53 receptor like protein 53 (.1) AT4G13920 224 / 1e-60 AtRLP50 receptor like protein 50 (.1) AT1G45616 220 / 4e-59 AtRLP6 receptor like protein 6 (.1) AT3G05660 218 / 9e-59 AtRLP33 receptor like protein 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001035 [exp] 1369 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1344 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1330 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1315 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1247 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 1143 / 0 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1118 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1112 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 1078 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106900 [exp] 533 / 2e-173 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 525 / 1e-170 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 514 / 1e-166 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 515 / 3e-166 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 508 / 2e-164 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 505 / 3e-163 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 497 / 3e-160 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 499 / 6e-159 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 472 / 2e-149 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 455 / 2e-143 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016340 pacid=23161848 polypeptide=Lus10016340 locus=Lus10016340.g ID=Lus10016340.BGIv1.0 annot-version=v1.0 ATGGCAACCAACTTCATGACTGTTTCTCCAGTATTCCTTCTTACTTGGTTGAGTTGGTTGTGTTTCTGCTGCTATGGAGCCTATGGTGTGAGTTGCATTG AAGCTGAACGAGAAGCCCTTTTGAGTTTCAAGGCTGACCTCAAAGACCCTTCAGGCCGGCTATCTTCTTGGATTAATGGCAGCAAAGATTGCTGTAAATG GACTGGTGTGGTGTGTGACAACGTTAAAGGCCATGTCACCGAGCTTCACCTGCCATGTCCGGATCGATGTTACGCTGGTTCTACGCTCAAGGGTAAGCTG AATCCTTCATTACTTGAGTTGAAGCACCTGAGTTATTTGGACCTGTCGAAGAACGATTTTCAAGGGATTCCTATTCCACGGTTTCTTGGGTCTATGACAA GTTTAAATTACCTTTTACTTGATGATTCTGGATTTGGGGGAGTCATTCCTCATCAACTAGGGAATCTCTCGAATTTGTTACAACTCGGTCTCAAGGCTGG TCGAGATGAAGACTACGTGATATATACTGCTAGTTTGCAGTGGCTTTCTGGACTGCCTGCATTGGAGTATCTTGATTTGAGCGACGTTGATCTTAGTAAT GCTTCTGATTGGCTAACCATGATGAATATTGTCCCGAATCTATCAGAATTGTATCTATCAAATTGTCAAATCAGTGATAGCTCTCCCTTGGTACATGTCA ACCTGTCATCTTTATCAGTTCTTGATCTCGGGTGGAACCGATTTGGTCCAGCTAATTTTCCTAGCTGGATTTCTCATCTGAAAGGTCTGACTTTGTTGGA TCTCCGACAGAACAACCTCATAGGTCCTGTCCCCGAAGAGCTTCGTAACCTTACTTCTCTCAGAAATCTTACACTGTCTAACAACATGTTCAGTGGTTCC ATACCGAACTGGCTGTTCAGTTTTCGTCATCTCGGGGAACTCAACTTTTACGATAGCTATTTGGACGGTGAAGTACCAAATGGAATTGGGAACTTAACCT CTCTTATGAAACTGGACTTATCATTCAATTCCCATCTTCAATTCGAAGCAGGAATTCCAGCGTCGTTCAAAAGGTTTTGTAAGTTGACCTCACTGAAACT GTCATACATAAAGCTAAAACAAAGTGTATCAGAGGTTCTTAGGATTCTTGAAGGGTGTCCTTCTAGCACACTAGAGGTATTGTCTCTGAGTGGTTGTCAA CTATTTGGTCAGTTGACTGACCAGATTGCCAAGTTTAAGAGACTAAACTATCTCGTGTTGGTTGACAACTCCATATCTGGTCCACTTCCAATGTTATTTG GGAAATTGACATCTTTGAATTATCTAAACCTTGCTAGCAACCATATTAATGGAACTATTCCAGCAAGTTTTGGGGAGCTTGCAGACCTTGAATTTGCTGT CATTTCCCATAACTTAATGGAGGGAATTGTTTCTTCCGACATTCACTTTGCTAACCTCACGAAGTTGAGTAGTTTCTATGCAGCTGGAAACCAAATTGTG TTCAAAGCTAAACCAGATTGGGTTCCTCCCAAGCGGCTTGGAGTACTGGACTTGAGTTCATGGTACGTTGGACCTGGCTTTCCCAACTGGCTCCAATCAA CTCAATATATCGTTTCTCTTGATCTGTCAAACACTGGAATTGCAGAACCAATTCCTGATTGGTTCTGGAGTAAGCATTCTCAGTTCTACTATCTCAACTT TTCTCACAACCAAATCCCTGGCCGCCTTCCAAGTTTTGTTCCTGCTCACTCCTCTGACTCATTGTTTGACCTCAGCTGGAACAAGTTGGAGGGCCCGCTG CCACTTATCTCTTCGAATTTGACTGCATTGGACCTTTCCAATAATTTTCTCACTGGAAACCTGTTCAAGTTCTTATGCTTCAATCCAGCTCAGACGAGGG ACACAGAGTTCCTCGATCTTCAAGGTAACCTTCTGTCTGAAGAGATACCAGAATGTTGGAGAAGTTGGACGAGCTTGAAGGTTATAAGACTTGGCAGCAA CAAGCTGAGAGGGAACATTCCGAAGTCCATTGGAACCTTGAGCTCCCTTCTGTCGTTGCGTATTCAGAACAACTCCCTGACTGGTGAAATCCCTTTCTCT CTTGGTAACTGCTCCACTCTAGTCTCCATCGACTTAGGCGACAATGAATTCGAAGGGAACATTCCGAACTGGATCGGGGAGAGACTTACAAGATTGGCAA TCGTCAATTTAAGAGGGAATAAGTTCACAGGGGAGATTCCTGAGGAGCTTTGCCATTTGCAGCTTCTGCAAATCTTGGACATTTCTCATAACTTTCTATC TGGGAGCTTGCCAGGGTGTGTAACTAATTTCAGCGCCATGGCCAATTCAAGTAATGAGGATCAAGGAGCAATTTACCTCTTCTTTGGAGGGGCGAAATTA TTTGTGGAATACCAGGAGCTTGTGGCGCAAGGGCAGGTTAAGACTTACAGCACCATACTGAATTATGTCAGAAGTTTAGACCTTTCATGGAATTACTTTT CGGGAGAGATTCCGAAGCAGATTACGAGCCTTGTAGCGTTGCACTATCTTAACTTGTCTCATAATTCACTCTCGGGTTCTCTCCCGGAAAGCGTGGATGC CATGGATTCGCTTGAATCTTTGGACATTTCTGGAAACCAACTATCTGGAGCAATTCCATCAGGAATGGCGAGTCTGACATTCTTGAATCACTTGAACTTG TCCTACAACAACTTGAGTGGGAGAATTCCTTTAAGCACTCAACTGCAGAGCTTTGATCCATCTAGCTTCACTGGTAACAAGGGCCTTTGCGGCTCTCCGT TGAATGATAACTGCTCCAGAAAGAACTCGGTGCCTGCTTCTGGTGAAGGGAATGGAGGAGATTATGATTTGCACTCGTATACTGTCAGCGTGATGTTTGG GTTTGTATTCGGATTCTGGGGAATAGTCGGTCCACTAGCAGTAAGCACACGATGGAGAAACTTGTGCTTCGGTGTCCTCGATCGCATTGTGGAAATGCTC TTGAACTTGGTTTGTATTAGTAAGAGCTTCTCATGA
AA sequence Show only first row Show all	>Lus10016340 pacid=23161848 polypeptide=Lus10016340 locus=Lus10016340.g ID=Lus10016340.BGIv1.0 annot-version=v1.0 MATNFMTVSPVFLLTWLSWLCFCCYGAYGVSCIEAEREALLSFKADLKDPSGRLSSWINGSKDCCKWTGVVCDNVKGHVTELHLPCPDRCYAGSTLKGKL NPSLLELKHLSYLDLSKNDFQGIPIPRFLGSMTSLNYLLLDDSGFGGVIPHQLGNLSNLLQLGLKAGRDEDYVIYTASLQWLSGLPALEYLDLSDVDLSN ASDWLTMMNIVPNLSELYLSNCQISDSSPLVHVNLSSLSVLDLGWNRFGPANFPSWISHLKGLTLLDLRQNNLIGPVPEELRNLTSLRNLTLSNNMFSGS IPNWLFSFRHLGELNFYDSYLDGEVPNGIGNLTSLMKLDLSFNSHLQFEAGIPASFKRFCKLTSLKLSYIKLKQSVSEVLRILEGCPSSTLEVLSLSGCQ LFGQLTDQIAKFKRLNYLVLVDNSISGPLPMLFGKLTSLNYLNLASNHINGTIPASFGELADLEFAVISHNLMEGIVSSDIHFANLTKLSSFYAAGNQIV FKAKPDWVPPKRLGVLDLSSWYVGPGFPNWLQSTQYIVSLDLSNTGIAEPIPDWFWSKHSQFYYLNFSHNQIPGRLPSFVPAHSSDSLFDLSWNKLEGPL PLISSNLTALDLSNNFLTGNLFKFLCFNPAQTRDTEFLDLQGNLLSEEIPECWRSWTSLKVIRLGSNKLRGNIPKSIGTLSSLLSLRIQNNSLTGEIPFS LGNCSTLVSIDLGDNEFEGNIPNWIGERLTRLAIVNLRGNKFTGEIPEELCHLQLLQILDISHNFLSGSLPGCVTNFSAMANSSNEDQGAIYLFFGGAKL FVEYQELVAQGQVKTYSTILNYVRSLDLSWNYFSGEIPKQITSLVALHYLNLSHNSLSGSLPESVDAMDSLESLDISGNQLSGAIPSGMASLTFLNHLNL SYNNLSGRIPLSTQLQSFDPSSFTGNKGLCGSPLNDNCSRKNSVPASGEGNGGDYDLHSYTVSVMFGFVFGFWGIVGPLAVSTRWRNLCFGVLDRIVEML LNLVCISKSFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016340 [exp]	0	1
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10002205 [exp]	15.3	0.5895
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	18.3	0.5384
AT3G59570			Ypt/Rab-GAP domain of gyp1p su...		Lus10022963 [exp]	24.1	0.6127
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	25.5	0.5596
AT5G46090			Protein of unknown function (D...		Lus10033645 [exp]	35.1	0.5289
AT2G43040		NPG1	no pollen germination 1, tetra...		Lus10017638 [exp]	38.4	0.5431
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	39.7	0.5280
AT1G47790			F-box and associated interacti...		Lus10011197 [exp]	56.1	0.5211
					Lus10002965 [exp]	69.2	0.4902
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10027014 [exp]	76.0	0.4969

Compare expression of checked genes

Lus10016340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.