Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 446 / 2e-141 disease resistance family protein / LRR family protein (.1) AT5G27060 268 / 1e-75 AtRLP53 receptor like protein 53 (.1) AT2G15080 266 / 1e-74 AtRLP19 receptor like protein 19 (.1.2) AT3G11010 261 / 1e-73 AtRLP34 receptor like protein 34 (.1) AT1G47890 259 / 4e-72 AtRLP7 receptor like protein 7 (.1) AT4G20140 259 / 1e-71 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 249 / 3e-68 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71400 245 / 3e-68 AtRLP12 receptor like protein 12 (.1) AT3G11080 243 / 3e-67 AtRLP35 receptor like protein 35 (.1) AT1G45616 240 / 8e-66 AtRLP6 receptor like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002755 [exp] 1708 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1542 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1410 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1325 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1301 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 1159 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1152 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002758 [exp] 1140 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016338 [exp] 1117 / 0 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G262800 [exp] 567 / 0 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 542 / 2e-177 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 542 / 3e-177 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 533 / 5e-174 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 529 / 1e-172 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 527 / 8e-172 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 518 / 2e-168 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 517 / 5e-166 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 509 / 3e-164 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 507 / 1e-162 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016341 pacid=23161911 polypeptide=Lus10016341 locus=Lus10016341.g ID=Lus10016341.BGIv1.0 annot-version=v1.0 ATGACTAATCCTGCTGTCTTGCTTTTTGTTTGCATGATTTGGATGCGTTTCTTCTGCTACGGAGCCTATGGTGTGAGATGCCATCAAGCTGAAAGAGAAG CGCTTTTGACTTTCAAGGCTGATCTCCAAGACCCTTCAGGACGGTTATCTTCTTGGGGTAATGGCAGCAAAAATTGCTGCAAATGGTCTGGCGTTGCATG TGACGACCTTACTGGCCATGTCACGGAGCTCGACCTCCAATGTCCGGATCATTGTTTTCATGATTCTAAGCTCAGAGGTAAGATGAATCCTTCCTTACTT GAGTTGAAGCATCTCAGTTACTTGGACCTGTCTGAGAATGATTTTCAAGGGGTTTCTATTCCGCGGTTTCTTGGGTCGATGACAAGTTTGCAAACTCTTT ACCTTGGTGGGTCTCGATTCCGGGGACTCATCCCTCATCAACTTGGAAACCTCTCAAACTTGATACAACTTGGTCTCATGGCTGGTGATGATGGCTATGT TCTATATGTTGATAGTTTGCAGTGGCTTTCTGGTCTCCCATCGCTGGAATACCTTGATTTGGATAAGGTTGATCTCAGTAATGCTTCTGATTGGCTGAAC ATGATAAATACAGTCCCAAATCTTGAAAGATTGTATCTATCAGATAGTCAAATCGGTGATGATATTCCTTTAGTCCATGTCAACCTATCATCTTTGTCAG TTCTTGATCTCAGTGCCAATCGATTTGGTCCATCTTCATTTCCTAGCTGGGTTTCTCATCTGGAAAGTCTGACTTCTTTGAATCTCCAAGATTGCAACCT CAGAGGTCCTGTTCCTGAAGAGCTTCGTAACCTTACATCTCTCAGAAAGCTTACACTGTCATACAACAATTTCAATAGTTCAATACCAAGTTGGCTGTTC AGTATTCGTCACCTCAAATACCTAGATTTTCTTAAAAGCAATTTGGTAGGTGATGTACCAAATGGAATAGGGAACATGACCTCTCTTGTTAGTCTGGACT TATCTTTCAATTCTGGTCTTAAACTTGAAGTAGGTATTCCCGCATCATTCAGAAGCTTTTGTCATTTGAGCTCACTGGAACTGTCAGACGTAAAGCTGAA ACAAAGTGTTTCTGAGGTGCTTCAAATTCTTGAGTGTTCTTCTGGCACACTAGAGAGATTGACCTTGGATGGTTGTGAACTATTTGGTCAGTTGACTGAT CGGACAGGCAAGTTCAAGAGACTAAAACACCTTTGGCTGGAGGACAACTCCATATCTGGTCCACTTCCAATGTCATTTGGGGAACTGATATCCTTGAATT CGGTCGACATCGCAAGAAACCAGATTAATGGGACTATTCCGACAAGTTTTGGGAAGCTTGCAGAGCTTGAAGTTGTTTACATTTCTCATAACTTAATGGA GGGCGTTGTTTCCTCAGAAATTCACTTTGCCAACCTCACGAAGTTGGTTATTTTCCAGGCAGCGGGAAACCAAATTGTGTTCAATGCTGAACCCGATTGG GTTCCTCCCGAGCAGCTCACAATACTGGACTTGAGTTCATGGTACGTTGGACCCGGCTTTCCCAAATGGCTCCAATCGTTGCTGTATATTAGGTCTCTTG ATCTGTCCAACACCGGAATCTCAGAATCAATCCCTGATTGGTTCTGGCGCATGGATTCTCATTTCTACTATCTCAATTTTTCTCACAACCAAATCCCCGG ACGGCTTCCAAGTTTTGTTCCTTCTATCTCCTACGACACAATGTTTGACTTCAGCTGGAACCACTTGGAAGGTCCACTGCCAGTTATATCGTCCAATTTG ACTGCATTAGACCTTTCTAATAATTTTTTATCTGGAAACTTGTTCAAGTTTCTGTGCTTGAATCCAGCTCAGTCAAGGGACACAGAGTTCCTCAATCTGC AAGGTAACCTTCTGTCTGAAGAGATACCAGAATGCTGGAGAAGTTGGACGAGCTTGAAGGTTATAAGACTAGGCAGCAACAAGTTGAGAGGGAAAATTCC GAAGTCCATTGGAGCCTTGAGCTCCCTTCTGTCGTTGCGTATTCAGAACAACTCCCTGACTGGTGAAATCCCTTTGTCTCTTGGTAACTGCTCCACTCTA GTCTCTATCGACTTAGGTGACAATGAATTGGAAGGGAATATTCCAAAGTGGATTGGGGAAAGGCTTTCAAGGCTGGCCATCATAAATTTGCGCTGTAATA AGTTCACAGGGTGCATTCCTGAGGAGCTTTGCCGTCTGCAGCTTCTGCAAATCTTGGACCTTTCTCATAACTATCTATCTGGGAACTTGTCAGGATGTGT AGCTAATTTCAGCGCCATGGCTGATTCAAATAATGAGGATCCAGGAGTAGTTTATCTTTTCTTCGGCGGGGCGAAAGTATTTGTGGAATACCAGGTTCTC GTGGTGCAAGGCCAGGTTAAGTCTTACAGCACTATACTGAATTACGTCAGAAGCTTGGATCTTTCCTGGAATAACTTGTCAGGAGAGATTCCAAAACAGA TTACTAGCCTTGGGGCCTTGCGTTATCTCAACTTGTCGCACAATTCTCTCTCCGGCTCAGTCCCAGGAGATTTAGATGCCATGAAGTCGCTGGAATCTTT GGACATGTCTGAAAATTATCTATCTGGACCTATCCCACTAGAAATGGCAAGTCTGACATTCTTGAATCACTTGAACTTGTCCTACAACAACTTAAGTGGT AGAATTCCTTCAAGCACTCAACTGCAGAGCTTTGACTTGTCTAGCTTCATCGGAAACTCAGGACTTTGCGGCTCTCCATTGACTGTGAACTGCAGCAGAA AGAACCTGGTGCCTGGTTCCGGTGAAGGAAACAGAGACCGTAATTTGAAGTGGTTCTCTGTCAGCGTATTATTTGGGTTTGCATGCGGGTTTTGGGCCAT CGTTGGTTCGCTAGAAGTCAGTGAACGATGGAGAGAGTTGTGTTTCGGTGTCTTGGATTGCATTGGGATAAACTCTGGGGCTTTGTGA
AA sequence Show only first row Show all	>Lus10016341 pacid=23161911 polypeptide=Lus10016341 locus=Lus10016341.g ID=Lus10016341.BGIv1.0 annot-version=v1.0 MTNPAVLLFVCMIWMRFFCYGAYGVRCHQAEREALLTFKADLQDPSGRLSSWGNGSKNCCKWSGVACDDLTGHVTELDLQCPDHCFHDSKLRGKMNPSLL ELKHLSYLDLSENDFQGVSIPRFLGSMTSLQTLYLGGSRFRGLIPHQLGNLSNLIQLGLMAGDDGYVLYVDSLQWLSGLPSLEYLDLDKVDLSNASDWLN MINTVPNLERLYLSDSQIGDDIPLVHVNLSSLSVLDLSANRFGPSSFPSWVSHLESLTSLNLQDCNLRGPVPEELRNLTSLRKLTLSYNNFNSSIPSWLF SIRHLKYLDFLKSNLVGDVPNGIGNMTSLVSLDLSFNSGLKLEVGIPASFRSFCHLSSLELSDVKLKQSVSEVLQILECSSGTLERLTLDGCELFGQLTD RTGKFKRLKHLWLEDNSISGPLPMSFGELISLNSVDIARNQINGTIPTSFGKLAELEVVYISHNLMEGVVSSEIHFANLTKLVIFQAAGNQIVFNAEPDW VPPEQLTILDLSSWYVGPGFPKWLQSLLYIRSLDLSNTGISESIPDWFWRMDSHFYYLNFSHNQIPGRLPSFVPSISYDTMFDFSWNHLEGPLPVISSNL TALDLSNNFLSGNLFKFLCLNPAQSRDTEFLNLQGNLLSEEIPECWRSWTSLKVIRLGSNKLRGKIPKSIGALSSLLSLRIQNNSLTGEIPLSLGNCSTL VSIDLGDNELEGNIPKWIGERLSRLAIINLRCNKFTGCIPEELCRLQLLQILDLSHNYLSGNLSGCVANFSAMADSNNEDPGVVYLFFGGAKVFVEYQVL VVQGQVKSYSTILNYVRSLDLSWNNLSGEIPKQITSLGALRYLNLSHNSLSGSVPGDLDAMKSLESLDMSENYLSGPIPLEMASLTFLNHLNLSYNNLSG RIPSSTQLQSFDLSSFIGNSGLCGSPLTVNCSRKNLVPGSGEGNRDRNLKWFSVSVLFGFACGFWAIVGSLEVSERWRELCFGVLDCIGINSGAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016341 [exp]	0	1
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10030376 [exp]	2.0	0.8521
AT1G45150			unknown protein		Lus10002387 [exp]	10.7	0.8346
AT4G26410			Uncharacterised conserved prot...		Lus10034621 [exp]	15.0	0.7869
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10022466 [exp]	18.1	0.8328
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	18.6	0.8406
AT1G12390			Cornichon family protein (.1)		Lus10000384 [exp]	21.9	0.8017
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10021229 [exp]	26.7	0.8018
AT3G44590			60S acidic ribosomal protein f...		Lus10026712 [exp]	29.7	0.7691
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	32.2	0.8193
AT1G76480			unknown protein		Lus10006035 [exp]	36.5	0.8293

Compare expression of checked genes

Lus10016341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.