Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 437 / 2e-138 disease resistance family protein / LRR family protein (.1) AT4G20140 276 / 3e-77 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 248 / 4e-68 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G47890 244 / 2e-67 AtRLP7 receptor like protein 7 (.1) AT1G74180 244 / 3e-67 AtRLP14 receptor like protein 14 (.1) AT1G71400 236 / 2e-65 AtRLP12 receptor like protein 12 (.1) AT2G15080 232 / 2e-63 AtRLP19 receptor like protein 19 (.1.2) AT1G58190 232 / 4e-63 AtRLP9 receptor like protein 9 (.1.2) AT5G63930 229 / 4e-62 Leucine-rich repeat protein kinase family protein (.1) AT4G13810 223 / 1e-61 AtRLP47 receptor like protein 47 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002758 [exp] 1259 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1135 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016344 [exp] 1133 / 0 AT2G34930 399 / 1e-124 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1125 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1124 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1122 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1115 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1095 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 998 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106900 [exp] 517 / 5e-168 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 515 / 5e-167 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 514 / 5e-167 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 495 / 6e-160 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 491 / 1e-158 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 491 / 2e-158 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 489 / 7e-158 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 435 / 7e-137 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 430 / 6e-134 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 428 / 8e-134 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016342 pacid=23161905 polypeptide=Lus10016342 locus=Lus10016342.g ID=Lus10016342.BGIv1.0 annot-version=v1.0 ATGATCCACAACTCCATGACTGTTTCTGCACTCCTTGTTTGGCTGAGCTGGATGTGTTACTGCCATGGGAGTTCTGGAGCTGGCTGCAATCTTGACGAAA GATCCGCTCTTTTAAGCATCAAAGCCGATCTCGAAGACCCTTCGAGCCGGCTATCTTCTTGGACAACAACAGGCAATGCAGATTGCTGCACATGGTCCGG TGTCGTCTGTGACAACATTACTGGCCATGTCACTCAGCTTCGCCTCGAATTATCCTATTTCTCAACGAATTCCCCGTTCAAGGGTAAGATAAGTCCTGCC TTACTTGGGTTGAAAAATCTCAGCTTTTTGGACCTGTCAAACAATGATTTCCAAGGAAATCCGATTCCAGGGTTTCTTGGGTCTGTCAGCAGTTTAAAAT CTCTTTTCCTTGTCGGATCTGGGTTCGGGGGAGTCATCCCTCACCAACTTGGAAATCTCTCGAACTTGCAAGAGCTTGGTCTTCAGTCTGGTGATAATGG CTATCTACTGTCTGCTGATAGTTTGCAGTGGCTTTCACGTCTTTCTTCCTTAGAATACCTTGATTTGACCAAAGTTGATCTCAGCAATGCTTCTGATTGG CTGAACATGATAAACACTGTCCCTTCTCTTTCAGAATTGTACCTAGCACACTGTCAAATCCGTTACAATCCTCCGTTACTACCTCTCAACCTGACATCTC TATCCGTTCTTGATCTTGGTTACAACCAATTCGGTCCGACTTCATTTCCTAGCTGGGTTTCTCATCTCAAAAGCCTGACTTTTTTCAGTCTTCAAAACAA CAATCTCGGAGGTCCAATTCCCGATGAGCTTCGGAACCTTACCTCCCTCACATCTCTTAGACTGTCTGCCAACAAGTTCAACGGCTCAATACCAGATTGG CTCTTCGGATTTCGCCATCTTAAGGAACTTTACCTTAACAGCAACAACTTGGACGGTAAACTATCAAATGAATTTGGCAACTTACCCTCACTTTCTACTC TTGACTTTTCGTTCAATCACGGTCTTGAAGGAGGTCTTCCTGTGTCGTTTCAAAATCTTTGCAATTTGAGCTCATTGTACCTGTCAGGCATAAAGCTACA GCAGAATGTATCAGAGGTGCTTCAAATTCTCGGAGAATGTTCTGCTAACACCTTAGATAAATTGTCTCTGGATAGTTGTCAACTATTCGGGGAAATAACC GATCGTATTGCGAAATTCAAGAGGCTGACTCAACTCAGACTGAGTAATAACTCCATATCTGGTCAACTTCCATCGTCGATCGGAGAATTGACATCCTTGC AATATGTAAGCCTTGCAGACAACCAAGTGAATGGCTCTATTCCAACAACAATCGGGGAACTCAAAGATTTAACCTTTGTCGATATATCTCGAAACTCGAT GGAAGGTGTTTTGTCCCCTGACGTTCACTTTGCTAACCTGACAAAGTTGGGTTGCTTCTATGCATCTGGAAACCAGATAGCTTTGGAAGTTAAGCCAGAC TCAATTTTCCCTAAACTCCTTGAGGTATTACACTTGGGTTCCTGGTACATTGGACCTCAGTTCCCCAAATGGCTCGAAGCATCTCGGTATATCAAATCTC TGGATCTGTCAAATTCCGGAATTTCAGAAAGCATTCCTGATTGGTTTTGGGGAGCGCAATCAGAGTTTTTCTATCTGAATATTTCTCACAACCAGATCCC CGGACGGCTTCCGAGTTATATTTCTCTTCATAGCCTCGACTCACTGTTCGACCTCAGCTGGAACAACTTGGAGGGTTCACTGCCACTTATCTCATCTGAT TTGACTGCATTGGACCTTTCCAATAATTTTCTCTCTGGAAACTTGACCAACTTCCTGTGCTTCAATTCAACTCAAGCAAGAAAGACACAGTTTCTCAATC TTCAAGGCAACCTTCTGTCAGGAGAGATACCGGATTGTTGGAGCAGTTGGGGAAGCTTACAGGTTTTAAGACTAGGAGGCAACAAGTTGATGGGTAACGT TCCAAATTCCATTGCAACCTTAGGCTCCCTCCTGTCTTTGCGCCTTCAGAACAACAGCCTGACAGGTGGAATCCCTGTATCCATTGGAAACTGCTCCAGT CTAGTCTCCATTGACTTAGGGGATAACGCATTCGAAGGCGAAATACCGAAGTGGATCGGAGAGAAGCTATCTAAGTTAGCCATCGTTAATCTACACGGTA ATAAGTTTGGAGGGAACATTCCGGTGGAGCTTTGCTATCTGCAGCATCTTCAAATCTTGGACCTTTCTAATAACATTCTATTCGGGGAATTACCAGAATG CGTCGCGAATTTTAGCGCCATGGCCAATCCAAGATATGGTGATGATATAGGAGTGATATACCTTTTCTTTGGCGGGGCGAAAGCATTTGTGGAATACCAG GTTCTTGTGGCGCAAGGTAAGGTTAAGGCTTACAGCACCATACTGAATTATGTCAGAAGTGTGGATCTTTCCTGGAATAACTTATCAGGAGAGATTCCGA AGCAGATTACAAACCTTGTGGCGTTGAAATATTTGAACTTGTCGCGTAATCAGCTGTCCGGTGCAATCCCGGGGAATTTAGATGCCATGAAGTCGCTGGA ATCTCTGGACTTGTCTGAAAACAAACTATTCGGAGGGATACCAGTTGGGATGGCGAGTCTGACATTCTTGAATCACTTGAATTTGTCGTACAACAGCTTG AGTGGGAGAATTCCTTCAAGCACTCAACTGCAGAGCTTTGATCCATCTAGCTTCATTGGTAACCCAGGACTTTGCGGCTCACCATTGAATGTGAGCTGTA GCGGAAAGAACTTCGTGACTGGCTCTGGAGGAGGATATCAAGCCTATGGCTTTCACTGGTTCGGTATCAGTGTATTGATAGGATTTCTGGTCAGTTGA
AA sequence Show only first row Show all	>Lus10016342 pacid=23161905 polypeptide=Lus10016342 locus=Lus10016342.g ID=Lus10016342.BGIv1.0 annot-version=v1.0 MIHNSMTVSALLVWLSWMCYCHGSSGAGCNLDERSALLSIKADLEDPSSRLSSWTTTGNADCCTWSGVVCDNITGHVTQLRLELSYFSTNSPFKGKISPA LLGLKNLSFLDLSNNDFQGNPIPGFLGSVSSLKSLFLVGSGFGGVIPHQLGNLSNLQELGLQSGDNGYLLSADSLQWLSRLSSLEYLDLTKVDLSNASDW LNMINTVPSLSELYLAHCQIRYNPPLLPLNLTSLSVLDLGYNQFGPTSFPSWVSHLKSLTFFSLQNNNLGGPIPDELRNLTSLTSLRLSANKFNGSIPDW LFGFRHLKELYLNSNNLDGKLSNEFGNLPSLSTLDFSFNHGLEGGLPVSFQNLCNLSSLYLSGIKLQQNVSEVLQILGECSANTLDKLSLDSCQLFGEIT DRIAKFKRLTQLRLSNNSISGQLPSSIGELTSLQYVSLADNQVNGSIPTTIGELKDLTFVDISRNSMEGVLSPDVHFANLTKLGCFYASGNQIALEVKPD SIFPKLLEVLHLGSWYIGPQFPKWLEASRYIKSLDLSNSGISESIPDWFWGAQSEFFYLNISHNQIPGRLPSYISLHSLDSLFDLSWNNLEGSLPLISSD LTALDLSNNFLSGNLTNFLCFNSTQARKTQFLNLQGNLLSGEIPDCWSSWGSLQVLRLGGNKLMGNVPNSIATLGSLLSLRLQNNSLTGGIPVSIGNCSS LVSIDLGDNAFEGEIPKWIGEKLSKLAIVNLHGNKFGGNIPVELCYLQHLQILDLSNNILFGELPECVANFSAMANPRYGDDIGVIYLFFGGAKAFVEYQ VLVAQGKVKAYSTILNYVRSVDLSWNNLSGEIPKQITNLVALKYLNLSRNQLSGAIPGNLDAMKSLESLDLSENKLFGGIPVGMASLTFLNHLNLSYNSL SGRIPSSTQLQSFDPSSFIGNPGLCGSPLNVSCSGKNFVTGSGGGYQAYGFHWFGISVLIGFLVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016342 [exp]	0	1
AT2G42940	AT-hook		Predicted AT-hook DNA-binding ...		Lus10007340 [exp]	7.3	0.7518
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	8.4	0.8145
AT1G79840	HD	GL2	GLABRA 2, HD-ZIP IV family of ...		Lus10011440 [exp]	13.9	0.7705
AT2G21950		SKIP6	SKP1 interacting partner 6 (.1...		Lus10030606 [exp]	16.5	0.7504
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031175 [exp]	24.5	0.7556
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	26.2	0.7307
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	26.3	0.7392
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Lus10009672 [exp]	26.5	0.7015
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	26.7	0.7565
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	28.0	0.7432

Compare expression of checked genes

Lus10016342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.