Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04670 607 / 0 Met-10+ like family protein / kelch repeat-containing protein (.1) AT1G18610 94 / 6e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 82 / 4e-16 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G27630 72 / 7e-13 ACBP5 acyl-CoA binding protein 5 (.1) AT2G36360 71 / 9e-13 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT3G05420 71 / 1e-12 ACBP4 acyl-CoA binding protein 4 (.1.2) AT3G07720 67 / 8e-12 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G18590 66 / 4e-11 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G68050 66 / 7e-11 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT2G18915 63 / 5e-10 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002756 [exp] 1038 / 0 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Lus10017860 [exp] 89 / 3e-18 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10034159 [exp] 76 / 3e-14 AT2G36360 658 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10043424 [exp] 76 / 5e-14 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10030757 [exp] 72 / 6e-13 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10031497 [exp] 72 / 9e-13 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10029902 [exp] 70 / 4e-12 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10010913 [exp] 69 / 9e-12 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10015176 [exp] 68 / 2e-11 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G015200 [exp] 641 / 0 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1) Potri.005G013000 [exp] 80 / 2e-15 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 77 / 1e-14 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 76 / 3e-14 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 76 / 3e-14 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G135200 [exp] 71 / 1e-12 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.005G026900 [exp] 70 / 3e-12 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 68 / 1e-11 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G024700 [exp] 67 / 1e-11 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.010G105700 [exp] 67 / 3e-11 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02676 [flax] [poplar] TYW3 Methyltransferase TYW3 CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10016343 pacid=23161853 polypeptide=Lus10016343 locus=Lus10016343.g ID=Lus10016343.BGIv1.0 annot-version=v1.0 ATGGAGTTCGAGAAGAGAAAGGCGGCAACTTTATCCCTATTTGCCTCATCGGAAGCCGACAAATCCCCAAAAGGTTTCATAGACGAGCCAATCATCCCAC TTCTCAATCTCCTCAACTCCCATCCATCTTACTTCACCACCAGCTCATGCTCCGGCCGGATCTCTATCCTCTCCCAACCTAAACCCTCTTCCTCCTCCTC CGCCGCCGTAAAAAAGAAGGCTCGCGGCGGCTCCTGGCTCTTCATAACTCACGACCACCCTGCCGATGCTTCCACAGTCGTCTCCCTCCTTTTCCCGCCG CCGCCGGACTCCTCCATTGTTTCTGATTCGACTGTTTCCCATGAGCTTGTTTTCAGATTCGAGCCTCTCATCATCGCCGTGGACTGCAGAGACATCCAAT CGGCTCAGTTCTTGGTTTCTCTGGCGATTTCCTCCGGGTTCAGAGAATCAGGGATCACCAGCGCCAGTAAGAAGAGGATAATAGTCGGGATTCGGTGCTC CATTAGGATAGAGGTTCCATTGGGCGACAGTGATAACGTGTTGGTGTCCAAGGATTATGTTGAGTTCTTAATTGGTGTGGCTAATCAGAAAATGGAAGCC AATTGGCAAAGGACGCAAGGGTTCTTTATGGCTTTGAAGAGAGAAACAGGGTTTGTGGTAGACGACTTGAAGGCGGAGAATGGAGATTATGATCTTGAAG ATAACCAAGTTGGAACAGCTCACCATTTGGAAGACAATGCTTGGTTGATAGGGGTTCCTGATCACAGTATAACCGCTATCCGCGTGCCAATTGTTGGAGA ATCTGTGGAGAAGCTTTTCCTTTGGGGTCATACTAGCTGTACACTAGGTAATAATATTGTCCCAGGCAGTATTCTGGTATTTGGTGGTTTTGGCGGGAAG GGAAGGCATGCTAGAATAAATGAATCCTTGCTGCTTGATTCATCTAGGGGCACATTGGAAAATGTCGATGTTGATGCTGCACCATCTTCTCGGTTGGGTC ACACAGCTTCTGTGGCTGGTGGCTTGGTTTTCGTCATTGGGGGAAGGACCGATCCTTTGAACATTTTGAATCAAGTTTGGCTTCTCGATGTGGCGAGGAA ACAATGGAGGCAGATTGAATGTGGCGGAAGCTATTTCCCTCCCAGGCATCGACATGCGGCTGGAGTTGTTGGTTCTAAGATATATGTATTTGGTGGGCTG AATAATGACTCGATATTTTCATCTTTCCATGTCTTTGACACTGTAAACTTACAGTGGAAAGAGGTAGTGGTAGGAGGGGATCAACCATGTGCACGTCACT CTCACTCAATGGTGGCTCATAAGTCTAAGCTATTTATGTTTGGAGGACACAACGGTGAGCAAGCCCGTACAGTCTTGATGTTGATACTTACATATGGAAA AAGGAAAAGCCGGCCGGAAGAAGTCCAAGTGCAAGACGTGGAGCATCAGTTATGGAGTCATGTGAGACTCGATTGTATTGGCAAAGAATTGCTTGTACGA AGCACTGCCAGTGTTGTAGATGGCGGTGGAGCAGCTTGTTATGCGTTTGGGACAAAGTTCACCGAACCTTTGACAGTTGATTTGCTTCCTCTTGCTTCTG TAGAAGTAAATAATGCGCCTTTACATAGTCAACATGTGATTGCTTCAGATTCTTCTGATCAGGTAAACGGAGAAAATAATGCTGTAACCTCCAGCACTTC AGCCAAGGATGATGGGGATAGTGAACAGCTATGGGTGTTGCAGCTTCAAAAGAAGTATGCGAAACTAGGGAAGGACTTGCTGAAGAAATTTGGGTGGTTA GATCTTGGGAGAAAAGTTTACTCTTTGGATAATGGACTTCAGATTTATTTCCCAGTCACTGGAAAATTTTCTGCCAAGTTCTCTGAAAAGCAGTATACAG AAAAGGCGACATCTTTAGACCAAGGCAAAACTAGTTTATGCCTGTGA
AA sequence Show only first row Show all	>Lus10016343 pacid=23161853 polypeptide=Lus10016343 locus=Lus10016343.g ID=Lus10016343.BGIv1.0 annot-version=v1.0 MEFEKRKAATLSLFASSEADKSPKGFIDEPIIPLLNLLNSHPSYFTTSSCSGRISILSQPKPSSSSSAAVKKKARGGSWLFITHDHPADASTVVSLLFPP PPDSSIVSDSTVSHELVFRFEPLIIAVDCRDIQSAQFLVSLAISSGFRESGITSASKKRIIVGIRCSIRIEVPLGDSDNVLVSKDYVEFLIGVANQKMEA NWQRTQGFFMALKRETGFVVDDLKAENGDYDLEDNQVGTAHHLEDNAWLIGVPDHSITAIRVPIVGESVEKLFLWGHTSCTLGNNIVPGSILVFGGFGGK GRHARINESLLLDSSRGTLENVDVDAAPSSRLGHTASVAGGLVFVIGGRTDPLNILNQVWLLDVARKQWRQIECGGSYFPPRHRHAAGVVGSKIYVFGGL NNDSIFSSFHVFDTVNLQWKEVVVGGDQPCARHSHSMVAHKSKLFMFGGHNGEQARTVLMLILTYGKRKSRPEEVQVQDVEHQLWSHVRLDCIGKELLVR STASVVDGGGAACYAFGTKFTEPLTVDLLPLASVEVNNAPLHSQHVIASDSSDQVNGENNAVTSSTSAKDDGDSEQLWVLQLQKKYAKLGKDLLKKFGWL DLGRKVYSLDNGLQIYFPVTGKFSAKFSEKQYTEKATSLDQGKTSLCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	0	1
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10041832 [exp]	6.5	0.8526
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10042113 [exp]	7.3	0.8331
AT2G37560		ATORC2	origin recognition complex sec...		Lus10025330 [exp]	8.4	0.7948
AT4G34880			Amidase family protein (.1)		Lus10027853 [exp]	9.3	0.8315
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	11.8	0.8152
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008869 [exp]	15.9	0.7346
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Lus10008929 [exp]	16.9	0.7793
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10020766 [exp]	20.1	0.7680
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	23.6	0.8088
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	25.1	0.7887

Compare expression of checked genes

Lus10016343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.