Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 381 / 9e-118 disease resistance family protein / LRR family protein (.1) AT4G20140 259 / 7e-72 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G13920 248 / 2e-69 AtRLP50 receptor like protein 50 (.1) AT1G74190 238 / 1e-65 AtRLP15 receptor like protein 15 (.1) AT2G25470 233 / 6e-64 AtRLP21 receptor like protein 21 (.1) AT1G58190 229 / 2e-62 AtRLP9 receptor like protein 9 (.1.2) AT5G44700 229 / 9e-62 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G53240 226 / 1e-61 AtRLP45 receptor like protein 45 (.1) AT4G04220 224 / 2e-61 AtRLP46 receptor like protein 46 (.1) AT5G46330 226 / 5e-61 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002758 [exp] 1573 / 0 AT2G34930 443 / 1e-140 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 1258 / 0 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 1154 / 0 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 1139 / 0 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 1137 / 0 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 1108 / 0 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 1104 / 0 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 1100 / 0 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 1038 / 0 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G025300 [exp] 475 / 3e-151 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G024500 [exp] 464 / 2e-146 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 453 / 4e-143 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 448 / 2e-142 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 442 / 8e-140 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 439 / 8e-139 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 438 / 2e-138 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 428 / 5e-134 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.010G106900 [exp] 424 / 5e-133 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 424 / 6e-133 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10016344 pacid=23161797 polypeptide=Lus10016344 locus=Lus10016344.g ID=Lus10016344.BGIv1.0 annot-version=v1.0 ATGACTGCCCCCGCAGTTTTTCTCCTTTGGCTGAGCTGGATGTGTTGCTGTCGTGGCAGTTCTGGTGCTGGCTGCAACGATGAAAGAGAAGCTCTTTTAA GTATCAAGGCGAATCTCGAAGACCCTTCAAGCCGGTTATCTTCTTGGAGAGCAAGCAATGGAGATTGTTGTACATGGTCTGGTGTGGTATGTGACAACAT TACTGGCTATGTCACTCAGCTTCATCTTGGATTACCCTATCTTTCGACGAATTCCCCGTTCAAGGGTAAGATAAGTCCTGCCTTACTTGTGTTGAAAAAT CTCAGCTTTTTGGACCTGTCAAACAACGATTTCCAAGGAAATCCGATTCCGGCATTTCTTGGCTCTATGAGCAGTTTGAGATCTCTTTTCCTTGTGCGGT CTGGATTCGGGGGAGTCATCCCTCACCAACTTGGAAATCTCTCAAACTTGCAAGAGCTTGGTCTTCAGGCTAGTAATGATGGCTATTTACTGTCTGCTGA TAGTTTGCAATGGCTTTCACGTCTTTCTTCACTAGAATACCTTGATCTGACAAAGGTTGATCTTAGCAATGCTTCTGACTGGCTGAAAATCATAAACACT GTCCCTTCTCTTACACACCTGTATCTCCCGTTCTGTCGAATCAGTCAGAATCCTCACATCTTTCATGTCAACCTGACATCTTTATCTGTTCTTGATCTAG GCTACAATCAATTTGGTCCAACTTCATTTCCTAGCTGGGTTTCTCATCTCAAAAGCCTTACTTCTTTGGATCTTCGACACAACAATCTCGGAGGTCCAAT TCCTGACAAGCTTCAGAACCTTACCTCCCTCATAGCTCTTACACTATCGTCCAACAAGTTCAATGGTTTCTTACCAGACTGGCTTTCCGGTTTTCGCAAT CTAAGGGACCTCAATCTTTACAGAAACCAGCTGAAAGGTAAAGTATCAAGTGGAATTGGGAACTTAACCTCACTTGCTGATCTCGACTTGTCAGTCAACG AAGATCTTGAAGGAGGTATTCCATCGTCATTCGTAAGTCTTTGCAATTTGAAGTCACTGGACCTGTCACACATAAAGCTACAGCAAAATATATCAGAAGT GCTTCAAATCCTCGGAGAATGTCCCGCCAGCACGCTAGAAAATCTGTCAATGGTAAACTGCCAACTATTCGGTCAGTTGACTGATAGAATCGGGAAGTTC AACAGGCTAAACCGTCTTTCGCTTGATACCAACTCTATATCTGGTCCCCTTCCGTCTTCATTTGGGGAACTGACATCCTTGAACTATGCAAACCTTGCAA ACAACCGAATCAACGGGAATATTCCAGCAAGTTTCGGGAAACTTGCAGAGTTGGGCACCCTTGATATTTCTCAGAACTTAATGGGCGGTGTGATTCTCCC TGAAATTCACTTTGCTAACCTCACAAAGTTGGGTATATTGAGCGCATCTGGAAACCACATGGTACTGGAAGTTGGACCAGATTCGGTTTTCCCTAAGCTC CTTGAGATAATAAACATGAATTCCTGGCACATTGGACCCGGGTTCCCCAAATGGCTCCAATCATTTCAGTATCTCAAATCTCTCGATCTCTCCAACTCCA GAATTTCAGAACCATTTCCAGATTGGTTCTGGGAATCACAATCAGAGTTCTATTATCTGAATTTCTCCCACAACCAAATCCCAGGAAGGCTTCCAACTTT CATGTCTGTTAAGTCTGCAGACTCAATGTATGACTTCAGCTTTAACAACTTGGACGGTCCACTTCCAGTCATCTCATCTAATTTGACTGCATTGGATCTT TCCAACAATTTCCTCTCTGGAAACCTGCTCAAGTTCTTGTGCTTCAATCCAGCTCAGATGAGAGACACCGAGTTTCTCAATCTTCAAGGGAACCTTCTGT CTGGAGAGATACCAGATTGTTGGAGGAGTTGGGGGAACTTGAAGGTTATTAGACTAGGCAACAATGATTTCAAAGGGAACATTTCAAACTCCATTGGAAC CTTAAGCAACCTCCTCTCTTTGCGCATTCAGAACACTAGCCTGACTGGTGAAATCCCATTCTCCATCAGCAACTGCTCGAGTCTAGTCTTTATCGACTTC AGGGACAATAGATTACTAGTGAGCATGAACTTGCCTGAATGTGTGGATAATATCAGTGCCATGGCCGATACAAGATACGTTGATGCAGGAGTAATTTACC TTTTCTTCGGCGGAGCAAAAACATTTGTGGAATACGAGGTTCTCGTAACGCAAGGTCAGGTTAAGACCTACAGCACCATTTTGAATTACGTCAGAAGTCT GGACCTCTCCTCGAATTTGCTGTCGGGGGACATTCCGAAGCAGATCACGAGCCTTGTAGCGTTGAAGTATCTGAACTTGTCGCGTAACTCATTCTCCGGT ACAATCCCGGGGAACATAGCTGCCATGGAGTCATTGGAATCTTTGGACTTGTCTGAGAACAAACTATTTGGAGCAATCCCAGTTGGGATGGCAAGTATGA CATTCTTGAATCATTTGAACTTGTCCTGCAACAACTTGAGGGGGAGAATTCCTTCAAGCACACAGCTGCAGAGCTTTGATCCATCTAGCTTTGTTGGAAA CAAGGGACTTTGTGGTTCTCCATTGATTGTGAACTGCAGCAGCGCTGACAACTTTGTGCCAGGTTCTGGCGAAGGAAACGAAGCCGATAATTCGAACTGG TTCCCGGTCAGTGCAATGTTTGGATATGTGGTAGGGTTTTGTGGCATTGTTGGTCCAGTAGCAGTCCACCAACAATGGATCACATGGACGAAGTGCTTAC CTTGTTAA
AA sequence Show only first row Show all	>Lus10016344 pacid=23161797 polypeptide=Lus10016344 locus=Lus10016344.g ID=Lus10016344.BGIv1.0 annot-version=v1.0 MTAPAVFLLWLSWMCCCRGSSGAGCNDEREALLSIKANLEDPSSRLSSWRASNGDCCTWSGVVCDNITGYVTQLHLGLPYLSTNSPFKGKISPALLVLKN LSFLDLSNNDFQGNPIPAFLGSMSSLRSLFLVRSGFGGVIPHQLGNLSNLQELGLQASNDGYLLSADSLQWLSRLSSLEYLDLTKVDLSNASDWLKIINT VPSLTHLYLPFCRISQNPHIFHVNLTSLSVLDLGYNQFGPTSFPSWVSHLKSLTSLDLRHNNLGGPIPDKLQNLTSLIALTLSSNKFNGFLPDWLSGFRN LRDLNLYRNQLKGKVSSGIGNLTSLADLDLSVNEDLEGGIPSSFVSLCNLKSLDLSHIKLQQNISEVLQILGECPASTLENLSMVNCQLFGQLTDRIGKF NRLNRLSLDTNSISGPLPSSFGELTSLNYANLANNRINGNIPASFGKLAELGTLDISQNLMGGVILPEIHFANLTKLGILSASGNHMVLEVGPDSVFPKL LEIINMNSWHIGPGFPKWLQSFQYLKSLDLSNSRISEPFPDWFWESQSEFYYLNFSHNQIPGRLPTFMSVKSADSMYDFSFNNLDGPLPVISSNLTALDL SNNFLSGNLLKFLCFNPAQMRDTEFLNLQGNLLSGEIPDCWRSWGNLKVIRLGNNDFKGNISNSIGTLSNLLSLRIQNTSLTGEIPFSISNCSSLVFIDF RDNRLLVSMNLPECVDNISAMADTRYVDAGVIYLFFGGAKTFVEYEVLVTQGQVKTYSTILNYVRSLDLSSNLLSGDIPKQITSLVALKYLNLSRNSFSG TIPGNIAAMESLESLDLSENKLFGAIPVGMASMTFLNHLNLSCNNLRGRIPSSTQLQSFDPSSFVGNKGLCGSPLIVNCSSADNFVPGSGEGNEADNSNW FPVSAMFGYVVGFCGIVGPVAVHQQWITWTKCLPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34930			disease resistance family prot...		Lus10016344 [exp]	0	1
					Lus10024932 [exp]	22.4	0.7952
AT5G55550			RNA-binding (RRM/RBD/RNP motif...		Lus10011728 [exp]	31.6	0.7084
AT1G73380			unknown protein		Lus10031887 [exp]	32.0	0.7711
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10020674 [exp]	40.1	0.7744
AT1G03910			unknown protein		Lus10035324 [exp]	58.3	0.7412
AT5G33280			Voltage-gated chloride channel...		Lus10038118 [exp]	64.4	0.6716
AT2G19170		SLP3	subtilisin-like serine proteas...		Lus10001006 [exp]	71.3	0.6791
AT1G62310			transcription factor jumonji (...		Lus10020033 [exp]	78.0	0.7288
AT1G19270		DA1	DA1 (.1)		Lus10016298 [exp]	82.0	0.6921
AT2G46110		PANB1, KPHMT1	ketopantoate hydroxymethyltran...		Lus10001878 [exp]	86.8	0.6961

Compare expression of checked genes

Lus10016344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.