Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55790 171 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT5G56060 141 / 2e-40 Domain of unknown function (DUF2431) (.1) AT1G55800 125 / 5e-33 Domain of unknown function (DUF2431) (.1) AT5G56075 118 / 3e-31 Domain of unknown function (DUF2431) (.1) AT5G25030 104 / 1e-26 Domain of unknown function (DUF2431) (.1) AT4G26485 103 / 3e-26 Domain of unknown function (DUF2431) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000235 [exp] 437 / 3e-154 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10002759 [exp] 437 / 3e-154 AT1G55790 176 / 7e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10039534 [exp] 244 / 8e-80 AT1G55790 173 / 9e-51 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032898 [exp] 162 / 3e-47 AT1G55790 232 / 2e-72 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032900 [exp] 160 / 2e-46 AT1G55790 256 / 1e-81 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10032901 [exp] 102 / 9e-25 AT1G55790 196 / 1e-58 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Lus10016346 [exp] 86 / 2e-19 AT1G55800 72 / 8e-15 Domain of unknown function (DUF2431) (.1) Lus10032899 [exp] 53 / 6e-08 AT1G55790 62 / 2e-21 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438100 [exp] 176 / 2e-53 AT1G55790 207 / 4e-64 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141900 [exp] 174 / 4e-53 AT1G55790 219 / 7e-69 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.003G101200 [exp] 174 / 5e-51 AT1G55790 276 / 8e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.006G002700 [exp] 162 / 6e-48 AT1G55790 185 / 1e-55 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141700 [exp] 156 / 3e-46 AT1G55790 198 / 1e-60 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G165600 [exp] 157 / 2e-44 AT1G55790 275 / 2e-88 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.001G438200 [exp] 142 / 1e-39 AT1G55790 169 / 1e-48 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) Potri.011G141501 [exp] 90 / 6e-22 AT4G26485 102 / 2e-28 Domain of unknown function (DUF2431) (.1) Potri.016G003133 [exp] 44 / 6e-06 AT1G55800 47 / 1e-07 Domain of unknown function (DUF2431) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF10354 [flax] [poplar] DUF2431 Domain of unknown function (DUF2431)
Representative CDS sequence Show only first row Show all	>Lus10016345 pacid=23161854 polypeptide=Lus10016345 locus=Lus10016345.g ID=Lus10016345.BGIv1.0 annot-version=v1.0 ATGGAGTCCTTAATGGGTCGATTCGTATCCTACATTCTCCGCTGTCTCTGCGGCGAAGAAGAAGAAAAACAGAGTACTCCCCTGCCTCTTCCATCAACCG CCGCCGACGGCGATCACCTCCGTTCTCCACTCCTCCGTTCTCAAATCTCGGACAATGGGAGGAGACAAGGGTTGTTTTTTGTTTTGGAACAACGATCTGA ATCTTCGAAACCTTTTGTTTTGTCGCGGGCTGGCAGTAACAACAACTTAAAGCTCGCCTCCTCTGCACCAGCACCGGCAGCAAAAGTGGTTCCATCCGTT CAAGCCGGTCATCAAGTTCTCAAGTTAAAAGAAAAGGCTCTTCAACTTCCTACCAAGTTGCGAGAAAAGGGTTCTTCTGTTGTTGTTGGGAAAAGCTTGA ATACTGCAGTGAACGAGGTATGGAAGAAGCATTACTGCAGCAACCAGAGGATTCTTCTGGTTGGAGAAGGAGATTTCTCTTTCTCTTCTTGTTTGGCTGT GGCGTTTGGCTCTGCTGTCAATATTACTGCTACTTCTCTCAACTCCACAGAGTTTCTGAGGAAGAATTACAGCGAAGCGATGGCGAACATAGAAGGACTG AAAGCCAGAGGAGCCCTGGTAATGCACGGTGTAGACGCCACCAAGATGGCGAAACACGGCTCCCTAAAGGGCATCAAGTTCGACAGAATTATCTTCAACT TCCCGCATGCTGGATTCTCCTCCAAAGAAGCTCCAGCTGAAACACAGATTCAGGGCCATCAGAAGCTGGTGAGATCGTTCTTCAAGAATGCGAAGAAGCT GATGAGAGGAGACGGTAATGGGGAAGTTCACGTGAGGCATAAGAGCAATGGGTTCCACCAGCGGTGGGATTTGGAAGGGTTGGCGTCGGATGCTGGTGGG TTGGCGCTGGTGGCTAAGGTGAAGTTCAAGCTGAAAGATTACCCAGGATATAATACTAAGTATGGGTTTGGTGGTGACAAGAACTTCGACTGCAATCCCA GTTGTACCTACAGATTTGGAGTCCAGAAACTCGATGCTTGA
AA sequence Show only first row Show all	>Lus10016345 pacid=23161854 polypeptide=Lus10016345 locus=Lus10016345.g ID=Lus10016345.BGIv1.0 annot-version=v1.0 MESLMGRFVSYILRCLCGEEEEKQSTPLPLPSTAADGDHLRSPLLRSQISDNGRRQGLFFVLEQRSESSKPFVLSRAGSNNNLKLASSAPAPAAKVVPSV QAGHQVLKLKEKALQLPTKLREKGSSVVVGKSLNTAVNEVWKKHYCSNQRILLVGEGDFSFSSCLAVAFGSAVNITATSLNSTEFLRKNYSEAMANIEGL KARGALVMHGVDATKMAKHGSLKGIKFDRIIFNFPHAGFSSKEAPAETQIQGHQKLVRSFFKNAKKLMRGDGNGEVHVRHKSNGFHQRWDLEGLASDAGG LALVAKVKFKLKDYPGYNTKYGFGGDKNFDCNPSCTYRFGVQKLDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55790			Domain of unknown function (DU...		Lus10016345 [exp]	0	1
AT5G52790			CBS domain-containing protein ...		Lus10036040 [exp]	5.8	0.7885
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	7.8	0.7960
AT5G04310			Pectin lyase-like superfamily ...		Lus10023542 [exp]	9.4	0.7449
AT3G06240			F-box family protein (.1)		Lus10027824 [exp]	11.6	0.7375
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	15.2	0.7756
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	18.4	0.7683
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	20.6	0.7637
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10024989 [exp]	21.2	0.7695
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	24.5	0.7567
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020026 [exp]	25.0	0.6892

Compare expression of checked genes

Lus10016345 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.